(Q34330573)

1 August 2017

title

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale (English)

1 reference

1 August 2017

2

Ryan L Minster

1 reference

1 August 2017

Nicola L Hawley

3

0 references

Daniel E. Weeks

object named as

Daniel E Weeks

9

0 references

Satupaitea Viali

6

object named as

Satupaitea Viali

1 reference

1 August 2017

8

Stephen T McGarvey

1 reference

1 August 2017

Olive D Buhule

1

1 reference

1 August 2017

Mario Medvedovic

4

1 reference

1 August 2017

Guangyun Sun

5

1 reference

1 August 2017

Ranjan Deka

7

1 reference

1 August 2017

publication date

13 October 2014

1 reference

1 August 2017

published in

Frontiers in Genetics

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1 August 2017

volume

5

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1 August 2017

page(s)

354

1 reference

describes a project that uses

1 August 2017

limma

object named as

limma

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4195366

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Prevalence of adiposity and associated cardiometabolic risk factors in the Samoan genome-wide association study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

DNA methylation and body-mass index: a genome-wide analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

A genome-wide methylation study on obesity: differential variability and differential methylation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

A data-driven approach to preprocessing Illumina 450K methylation array data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Batch effects and pathway analysis: two potential perils in cancer studies involving DNA methylation array analysis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

OSAT: a tool for sample-to-batch allocations in genomics experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Batch effect correction for genome-wide methylation data with Illumina Infinium platform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Increased methylation variation in epigenetic domains across cancer types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Personalized epigenomic signatures that are stable over time and covary with body mass index

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Tackling the widespread and critical impact of batch effects in high-throughput data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

6 July 2018

Epigenetics in cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Epigenetic events in gastrointestinal cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Aberrant epigenetic patterns in the etiology of gastrointestinal cancers.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Capturing heterogeneity in gene expression studies by surrogate variable analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Adjusting batch effects in microarray expression data using empirical Bayes methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

The importance of experimental design in proteomic mass spectrometry experiments: some cautionary tales

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

Randomization in clinical trials: conclusions and recommendations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4195366

High-resolution serum proteomic patterns for ovarian cancer detection.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2014.00354

On the design and analysis of gene expression studies in human populations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2014.00354

Run batch effects potentially compromise the usefulness of genomic signatures for ovarian cancer

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25352862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FGENE.2014.00354

1 reference

1 August 2017

1 reference

1 August 2017

1 reference