(Q27317109)

3

0 references

author name string

Markus Düttmann

1

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Toshio Yanagida

4

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Alexander S Mikhailov

Creative Commons Attribution 4.0 International

5

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language of work or name

English

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publication date

2012

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published in

PLOS One

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volume

7

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issue

10

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page(s)

e45859

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copyright license

start time

15 October 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Direct visualization of secondary structures of F-actin by electron cryomicroscopy

21 March 2017

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Nonlinearity of mechanochemical motions in motor proteins

21 March 2017

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The structure of native G-actin

21 March 2017

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The nature of the globular- to fibrous-actin transition

21 March 2017

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Crystal structure of monomeric actin in the ATP state. Structural basis of nucleotide-dependent actin dynamics

21 March 2017

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The crystal structure of uncomplexed actin in the ADP state

21 March 2017

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Atomic structure of the actin:DNase I complex

21 March 2017

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Cellular motility driven by assembly and disassembly of actin filaments

21 March 2017

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VMD: visual molecular dynamics

21 March 2017

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Atomic model of the actin filament

21 March 2017

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Atomic-level characterization of the structural dynamics of proteins

21 March 2017

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Myosin-V as a mechanical sensor: an elastic network study

7 April 2017

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Multiscale modeling and mechanics of filamentous actin cytoskeleton.

28 September 2017

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Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations.

28 September 2017

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Pi release from myosin: a simulation analysis of possible pathways

28 September 2017

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Robust processivity of myosin V under off-axis loads

28 September 2017

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Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

28 September 2017

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Computation of conformational transitions in proteins by virtual atom molecular mechanics as validated in application to adenylate kinase

28 September 2017

1 reference

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Nucleotide-dependent conformational states of actin

28 September 2017

1 reference

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Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II

28 September 2017

1 reference

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Load-dependent ADP binding to myosins V and VI: implications for subunit coordination and function

28 September 2017

1 reference

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Illuminating the mechanistic roles of enzyme conformational dynamics

28 September 2017

1 reference

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Coarse-grained free energy functions for studying protein conformational changes: a double-well network model

28 September 2017

1 reference

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Nucleotide effects on the structure and dynamics of actin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Nonlinear relaxation dynamics in elastic networks and design principles of molecular machines

28 September 2017

1 reference

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Coarse-grained modeling of the actin filament derived from atomistic-scale simulations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Coarse-grained models for proteins

28 September 2017

1 reference

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How does protein architecture facilitate the transduction of ATP chemical-bond energy into mechanical work? The cases of nitrogenase and ATP binding-cassette proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

28 September 2017

1 reference

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Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide

28 September 2017

1 reference

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Anisotropy of fluctuation dynamics of proteins with an elastic network model

28 September 2017

1 reference

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A surprising simplicity to protein folding.

28 September 2017

1 reference

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Go-ing for the prediction of protein folding mechanisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Molecular dynamics study of unbinding of the avidin-biotin complex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Theoretical Studies of Protein Folding

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Manipulation of Conformational Change in Proteins by Single-Residue Perturbations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Violation of the fluctuation-dissipation theorem in a protein system

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

How well can we understand large-scale protein motions using normal modes of elastic network models?

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Conformational change of proteins arising from normal mode calculations

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Rate constants for the reactions of ATP- and ADP-actin with the ends of actin filaments

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Effect of ATP on actin filament stiffness

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

A mesoscopic model for protein enzymatic dynamics in solution.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Brownian search-and-catch mechanism for myosin-VI steps

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Analysis of domain motions by approximate normal mode calculations.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3471905

Actin polymerization and ATP hydrolysis

28 November 2018

1 reference

12 December 2020

Mesoscale modeling of molecular machines: cyclic dynamics and hydrodynamical fluctuations

1 reference

12 December 2020

Normal mode analysis of G-actin

1 reference

12 December 2020

Slow Energy Relaxation of Macromolecules and Nanoclusters in Solution

1 reference

12 December 2020

Protein dynamics determined by backbone conformation and atom packing

1 reference

12 December 2020

Elastic models of conformational transitions in macromolecules

1 reference

12 December 2020

Dynamic polymorphism of single actin molecules in the actin filament

1 reference

12 December 2020

Structural modeling and molecular dynamics simulation of the actin filament

1 reference

12 December 2020

FASTRUN: a special purpose, hardwired computer for molecular simulation

1 reference

12 December 2020