(Q27333668)

English

"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution

scientific article (publication date: March 2011)

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scholarly article

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"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution (English)

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protein evolution

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object named as

Yuchun Lin

2

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object named as

Jhih-Wei Chu

3

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author name string

Jordi Silvestre-Ryan

1

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language of work or name

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publication date

March 2011

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PLOS Computational Biology

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7

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3

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e1002023

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copyright license

Creative Commons Attribution 4.0 International

24 March 2011

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April 2022 Public Data File from Crossref

copyright status

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The Pfam protein families database

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Application of a Theory of Enzyme Specificity to Protein Synthesis

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21 March 2017

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21 March 2017

Structural basis of inhibition revealed by a 1:2 complex of the two-headed tomato inhibitor-II and subtilisin Carlsberg

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21 March 2017

Random matrix approach to cross correlations in financial data

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21 March 2017

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The crystal structure of the catalytic core domain of endoglucanase I from Trichoderma reesei at 3.6 A resolution, and a comparison with related enzymes

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21 March 2017

Calcium-independent subtilisin by design

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7 April 2017

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

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Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networks

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Active-site motions and polarity enhance catalytic turnover of hydrated subtilisin dissolved in organic solvents

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Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms

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Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions

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Allostery and cooperativity revisited

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28 September 2017

Allostery: absence of a change in shape does not imply that allostery is not at play

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Reassessing a sparse energetic network within a single protein domain

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28 September 2017

Contact rearrangements form coupled networks from local motions in allosteric proteins

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28 September 2017

A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis

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28 September 2017

Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES.

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28 September 2017

Residues crucial for maintaining short paths in network communication mediate signaling in proteins

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28 September 2017

Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations

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28 September 2017

Water dynamics and salt-activation of enzymes in organic media: mechanistic implications revealed by NMR spectroscopy

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28 September 2017

Cation-binding sites of subtilisin Carlsberg probed with Eu(III) luminescence

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2 June 2018

Directed evolution of a subtilisin with calcium-independent stability

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2 June 2018

Enzyme engineering for nonaqueous solvents: random mutagenesis to enhance activity of subtilisin E in polar organic media

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Inversion of radial distribution functions to pair forces by solving the Yvon-Born-Green equation iteratively

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21 January 2018

Directed coevolution of stability and catalytic activity in calcium-free subtilisin

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21 January 2018

Small-world view of the amino acids that play a key role in protein folding.

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Reaction Path Optimization with Holonomic Constraints and Kinetic Energy Potentials

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Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

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Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

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27 November 2018

Mechanism of the kinetically-controlled folding reaction of subtilisin

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Allostery in a coarse-grained model of protein dynamics

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On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: illustrations using lattice model

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Cation-dependent stability of subtilisin

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Identifiers

10.1371/JOURNAL.PCBI.1002023

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DBLP publication ID

journals/ploscb/Silvestre-RyanLC11

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DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

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ResearchGate publication ID

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