(Q27496603)

English

Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays

scientific article (publication date: 13 October 2012)

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scholarly article

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Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays (English)

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Streptococcus pyogenes

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Streptococcus pyogenes

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based on heuristic

inferred from title

Bernd Kreikemeyer

object named as

Bernd Kreikemeyer

10

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author name string

Nadja Patenge

1

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André Billion

2

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Peter Raasch

3

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Jana Normann

4

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Aleksandra Wisniewska-Kucper

5

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Julia Retey

6

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Valesca Boisguérin

7

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Thomas Hartsch

8

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Torsten Hain

9

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language of work or name

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publication date

13 October 2012

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13

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1

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550

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https://scigraph.springernature.com/pub.10.1186/1471-2164-13-550

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Regulation by small RNAs in bacteria: expanding frontiers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542284

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1 reference

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20 March 2017

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1 reference

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20 March 2017

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1 reference

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20 March 2017

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1 reference

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20 March 2017

A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus

1 reference

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1 reference

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20 March 2017

Regulatory RNAs in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542284

20 March 2017

Rfam: updates to the RNA families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542284

20 March 2017

Quantifying similarity between motifs

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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20 March 2017

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1 reference

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20 March 2017

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1 reference

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20 March 2017

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542284

20 March 2017

Artemis: sequence visualization and annotation

1 reference

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20 March 2017

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23062031

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based on heuristic

inferred from PubMed ID database lookup

Noncoding RNAs at the membrane

1 reference

https://pubmed.ncbi.nlm.nih.gov/23062031

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-13-550

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Consolidated OpenCitations Corpus – April 2017

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-550

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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