(Q27644406)

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Using hydrogen deuterium exchange mass spectrometry to engineer optimized constructs for crystallization of protein complexes: Case study of PI4KIIIβ with Rab11

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4 March 2020

Using hydrogen deuterium exchange mass spectrometry to engineer optimized constructs for crystallization of protein complexes: Case study of PI4KIIIβ with Rab11 (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26756197%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Jacob A McPhail

2

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4 March 2020

Meredith L Jenkins

3

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4 March 2020

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4 March 2020

Roger L. Williams

7

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4 March 2020

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4 March 2020

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Melissa L Fowler

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4 March 2020

Florentine U Rutaganira

5

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4 March 2020

Kevan M Shokat

6

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4 March 2020

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1 February 2016

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4 March 2020

Protein Science

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4 March 2020

25

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4 March 2020

4

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4 March 2020

826-839

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4 March 2020

Structure of Rab11-FIP3-Rabin8 reveals simultaneous binding of FIP3 and Rabin8 effectors to Rab11

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4832280

20 March 2017

Structures of PI4KIII complexes show simultaneous recruitment of Rab11 and its effectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4832280

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1 reference

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PKCβ phosphorylates PI3Kγ to activate it and release it from GPCR control

1 reference

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Structure of Lipid Kinase p110β/p85β Elucidates an Unusual SH2-Domain-Mediated Inhibitory Mechanism

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20 March 2017

Structural basis for Rab11-mediated recruitment of FIP3 to recycling endosomes

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20 March 2017

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20 March 2017

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1 reference

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20 March 2017

The structural GDP/GTP cycle of Rab11 reveals a novel interface involved in the dynamics of recycling endosomes

1 reference

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20 March 2017

Towards automated crystallographic structure refinement with phenix.refine

1 reference

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20 March 2017

iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM

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Features and development of Coot

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20 March 2017

Phasercrystallographic software

1 reference

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20 March 2017

Targeting Plasmodium PI(4)K to eliminate malaria

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Phosphatidylinositol 4-kinases: hostages harnessed to build panviral replication platforms

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Viral reorganization of the secretory pathway generates distinct organelles for RNA replication

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7 April 2017

LigPlot+: multiple ligand-protein interaction diagrams for drug discovery

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7 April 2017

The Phenix software for automated determination of macromolecular structures

1 reference

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7 April 2017

electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation

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7 April 2017

Protein disorder prediction: implications for structural proteomics

2 references

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7 April 2017

https://api.crossref.org/works/10.1002%2FPRO.2879

21 January 2018

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1 reference

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Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity

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29 September 2017

Challenges in the interpretation of protein h/d exchange data: a molecular dynamics simulation perspective

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A structural atlas of kinases inhibited by clinically approved drugs

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29 September 2017

Applications of hydrogen/deuterium exchange MS from 2012 to 2014.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4832280

29 September 2017

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1 reference

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1 reference

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1 reference

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1 reference

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Dynamic steps in receptor tyrosine kinase mediated activation of class IA phosphoinositide 3-kinases (PI3K) captured by H/D exchange (HDX-MS).

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

based on heuristic

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10.1002/PRO.2879

2 references

Consolidated OpenCitations Corpus – April 2017

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4 March 2020

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Europe PubMed Central

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4 March 2020

PubMed publication ID

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Europe PubMed Central

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4 March 2020

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