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English
Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome
scientific article
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scholarly article
1 reference
stated in
PubMed
PubMed ID
23193268
retrieved
1 December 2016
title
Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome
(English)
1 reference
stated in
PubMed
PubMed ID
23193268
retrieved
1 December 2016
main subject
RRNA-processing protein UTP22 YGR090W
1 reference
stated in
GOA release 2020-03-11
RNA-binding ribosome biosynthesis protein MRD1 YPR112C
1 reference
stated in
GOA release 2020-03-11
author
David Tollervey
series ordinal
8
0 references
Martin Högbom
series ordinal
7
0 references
Juri Rappsilber
series ordinal
5
0 references
Sander Granneman
series ordinal
2
0 references
Åsa Segerstolpe
series ordinal
1
0 references
Petra Björk
series ordinal
3
0 references
Flavia de Lima Alves
series ordinal
4
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Lars Wieslander
object named as
Lars Wieslander
series ordinal
9
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author name string
Charlotta Andersson
series ordinal
6
0 references
language of work or name
English
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publication date
January 2013
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published in
Nucleic Acids Research
1 reference
stated in
PubMed
PubMed ID
23193268
retrieved
1 December 2016
volume
41
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page(s)
1178-90
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issue
2
0 references
copyright license
Creative Commons Attribution-NonCommercial 3.0 Unported
start time
4 October 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
1 reference
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PubMed Central
reference URL
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20 March 2017
Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes.
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PubMed Central
reference URL
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retrieved
20 March 2017
Mrd1p binds to pre-rRNA early during transcription independent of U3 snoRNA and is required for compaction of the pre-rRNA into small subunit processomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
20 March 2017
Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
20 March 2017
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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20 March 2017
Proteome survey reveals modularity of the yeast cell machinery
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PubMed Central
reference URL
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20 March 2017
Mrd1p is required for processing of pre-rRNA and for maintenance of steady-state levels of 40 S ribosomal subunits in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
20 March 2017
Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
20 March 2017
Ribosome synthesis in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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A generic protein purification method for protein complex characterization and proteome exploration
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PubMed Central
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20 March 2017
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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20 March 2017
Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast
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PubMed Central
reference URL
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20 March 2017
RRP5 is required for formation of both 18S and 5.8S rRNA in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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20 March 2017
The post-transcriptional steps of eukaryotic ribosome biogenesis
1 reference
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PubMed Central
reference URL
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20 March 2017
RNA-binding proteins: modular design for efficient function
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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20 March 2017
Evolutionary conservation of the ribosomal biogenesis factor Rbm19/Mrd1: implications for function
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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20 March 2017
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
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PubMed Central
reference URL
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7 April 2017
In-gel digestion for mass spectrometric characterization of proteins and proteomes
1 reference
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PubMed Central
reference URL
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7 April 2017
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
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Ribosome assembly in eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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7 April 2017
Pre-ribosomes on the road from the nucleolus to the cytoplasm
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA
1 reference
stated in
PubMed Central
reference URL
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7 April 2017
A second base pair interaction between U3 small nucleolar RNA and the 5'-ETS region is required for early cleavage of the yeast pre-ribosomal RNA.
1 reference
stated in
PubMed Central
reference URL
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29 September 2017
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
1 reference
stated in
PubMed Central
reference URL
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29 September 2017
The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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29 September 2017
Yeast pre-rRNA processing and modification occur cotranscriptionally
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Mrd1p is required for release of base-paired U3 snoRNA within the preribosomal complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
1 reference
stated in
PubMed Central
reference URL
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retrieved
29 September 2017
Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
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29 September 2017
A novel conserved RNA-binding domain protein, RBD-1, is essential for ribosome biogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Base pairing between U3 small nucleolar RNA and the 5' end of 18S rRNA is required for pre-rRNA processing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Compilation of small ribosomal subunit RNA structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.
1 reference
stated in
PubMed Central
reference URL
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retrieved
29 September 2017
Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
29 September 2017
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
2 June 2018
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FNAR%2FGKS1129
retrieved
21 January 2018
Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553979
retrieved
27 November 2018
Nucleolin is a sequence-specific RNA-binding protein: characterization of targets on pre-ribosomal RNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23193268
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKS1129
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PMCID
3553979
0 references
PubMed ID
23193268
1 reference
stated in
PubMed
PubMed ID
23193268
retrieved
1 December 2016
ResearchGate publication ID
233799050
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