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A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
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scholarly article
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PubMed
PubMed ID
21811236
retrieved
1 December 2016
title
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
(English)
1 reference
stated in
PubMed
PubMed ID
21811236
retrieved
1 December 2016
main subject
Nop12p YOL041C
1 reference
stated in
GOA release 2020-03-11
MRNA-binding ribosome synthesis protein NOP7 YGR103W
1 reference
stated in
GOA release 2020-03-11
Erb1p YMR049C
1 reference
stated in
GOA release 2020-03-11
MRNA-binding ribosome biosynthesis protein NOP4 YPL043W
1 reference
stated in
GOA release 2020-03-11
Cic1p YHR052W
1 reference
stated in
GOA release 2020-03-11
SsRNA exonuclease RAT1 YOR048C
1 reference
stated in
GOA release 2020-03-11
RRNA-binding ribosome biosynthesis protein NOP15 YNL110C
1 reference
stated in
GOA release 2020-03-11
author
David Tollervey
series ordinal
3
0 references
Elisabeth Petfalski
series ordinal
2
0 references
Sander Granneman
series ordinal
1
0 references
language of work or name
English
0 references
publication date
2 August 2011
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published in
The EMBO Journal
1 reference
stated in
PubMed
PubMed ID
21811236
retrieved
1 December 2016
volume
30
0 references
page(s)
4006-19
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issue
19
0 references
cites work
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Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae
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RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1.
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Nob1 binds the single-stranded cleavage site D at the 3'-end of 18S rRNA with its PIN domain
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The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
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The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.
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Endonucleolytic RNA cleavage by a eukaryotic exosome
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PubMed Central
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An in vivo map of the yeast protein interactome
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PubMed Central
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Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes.
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PubMed Central
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20 March 2017
Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast
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PubMed Central
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20 March 2017
Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes
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PubMed Central
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20 March 2017
Rat1p and Rai1p function with the nuclear exosome in the processing and degradation of rRNA precursors
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PubMed Central
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20 March 2017
High-definition macromolecular composition of yeast RNA-processing complexes
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20 March 2017
Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis
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PubMed Central
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20 March 2017
Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits
1 reference
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PubMed Central
reference URL
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20 March 2017
60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
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PubMed Central
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20 March 2017
Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis
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PubMed Central
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20 March 2017
ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs
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PubMed Central
reference URL
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20 March 2017
Nucleolar protein Nop12p participates in synthesis of 25S rRNA in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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20 March 2017
A comprehensive two-hybrid analysis to explore the yeast protein interactome
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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20 March 2017
The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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20 March 2017
A nucleolar protein related to ribosomal protein L7 is required for an early step in large ribosomal subunit biogenesis
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PubMed Central
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20 March 2017
Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p
1 reference
stated in
PubMed Central
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20 March 2017
A generic protein purification method for protein complex characterization and proteome exploration
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PubMed Central
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20 March 2017
Processing of the precursors to small nucleolar RNAs and rRNAs requires common components
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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20 March 2017
The yeast nucleolar protein Nop4p contains four RNA recognition motifs necessary for ribosome biogenesis.
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PubMed Central
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20 March 2017
An essential yeast gene with homology to the exonuclease-encoding XRN1/KEM1 gene also encodes a protein with exoribonuclease activity
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PubMed Central
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20 March 2017
The yeast NOP4 gene product is an essential nucleolar protein required for pre-rRNA processing and accumulation of 60S ribosomal subunits.
1 reference
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PubMed Central
reference URL
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20 March 2017
The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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20 March 2017
Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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20 March 2017
Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro
2 references
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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7 April 2017
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FEMBOJ.2011.256
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7 January 2021
based on heuristic
inferred from DOI database lookup
Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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7 April 2017
A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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7 April 2017
Synthetic lethality with fibrillarin identifies NOP77p, a nucleolar protein required for pre-rRNA processing and modification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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7 April 2017
5'-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Maturation of eukaryotic ribosomes: acquisition of functionality
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Rlp7p is associated with 60S preribosomes, restricted to the granular component of the nucleolus, and required for pre-rRNA processing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast
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PubMed Central
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29 September 2017
The structure of the ITS2-proximal stem is required for pre-rRNA processing in yeast
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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29 September 2017
Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA.
1 reference
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PubMed Central
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29 September 2017
Initiator proteins for the assembly of the 50S subunit from Escherichia coli ribosomes
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29 September 2017
Some characteristics of processing sites in ribosomal precursor RNA of yeast
1 reference
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PubMed Central
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29 September 2017
Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA from Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
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29 September 2017
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking
1 reference
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PubMed Central
reference URL
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2 June 2018
Evolutionarily conserved structural elements are critical for processing of Internal Transcribed Spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209772
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2 June 2018
5'-end formation of yeast 5.8SL rRNA is an endonucleolytic event.
1 reference
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Crossref
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https://api.crossref.org/works/10.1038%2FEMBOJ.2011.256
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21 January 2018
The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FEMBOJ.2011.256
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21 January 2018
Domain III of Saccharomyces cerevisiae 25 S ribosomal RNA: its role in binding of ribosomal protein L25 and 60 S subunit formation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21811236
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Internal transcribed spacer 1 of the yeast precursor ribosomal RNA. Higher order structure and common structural motifs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21811236
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21811236
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/EMBOJ.2011.256
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
406066
OpenCitations bibliographic resource ID
406066
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
406066
PMCID
3209772
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
406066
PubMed ID
21811236
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
406066
ResearchGate publication ID
51542218
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