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Ebs1p, a negative regulator of gene expression controlled by the Upf proteins in the yeast Saccharomyces cerevisiae
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scholarly article
1 reference
stated in
PubMed
PubMed ID
16467471
retrieved
1 December 2016
title
Ebs1p, a negative regulator of gene expression controlled by the Upf proteins in the yeast Saccharomyces cerevisiae
(English)
1 reference
stated in
PubMed
PubMed ID
16467471
retrieved
1 December 2016
main subject
Saccharomyces cerevisiae
0 references
Ebs1p YDR206W
1 reference
stated in
GOA release 2020-03-11
author name string
Amanda S Ford
series ordinal
1
0 references
Qiaoning Guan
series ordinal
2
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Eric Neeno-Eckwall
series ordinal
3
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Michael R Culbertson
series ordinal
4
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language of work or name
English
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publication date
February 2006
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published in
Eukaryotic Cell
1 reference
stated in
PubMed
PubMed ID
16467471
retrieved
1 December 2016
volume
5
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issue
2
0 references
page(s)
301-12
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cites work
Transcript selection and the recruitment of mRNA decay factors for NMD in Saccharomyces cerevisiae
1 reference
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PubMed Central
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20 March 2017
Cap-binding protein 1-mediated and eukaryotic translation initiation factor 4E-mediated pioneer rounds of translation in yeast
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PubMed Central
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20 March 2017
Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription-coupled DNA repair and RNA processing
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PubMed Central
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20 March 2017
Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae
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PubMed Central
reference URL
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20 March 2017
Interaction between Ski7p and Upf1p is required for nonsense-mediated 3'-to-5' mRNA decay in yeast
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation
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PubMed Central
reference URL
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20 March 2017
Nuclear import of Upf3p is mediated by importin-alpha/-beta and export to the cytoplasm is required for a functional nonsense-mediated mRNA decay pathway in yeast
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
Eap1p, a novel eukaryotic translation initiation factor 4E-associated protein in Saccharomyces cerevisiae.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
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PubMed Central
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20 March 2017
SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
A factor required for nonsense-mediated mRNA decay in yeast is exported from the nucleus to the cytoplasm by a nuclear export signal sequence.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
20 March 2017
CRM1 is an export receptor for leucine-rich nuclear export signals
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
Exportin 1 (Crm1p) is an essential nuclear export factor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
20 March 2017
The translation initiation factor eIF-4E binds to a common motif shared by the translation factor eIF-4 gamma and the translational repressors 4E-binding proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
The signal recognition particle in S. cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
The importin-beta family member Crm1p bridges the interaction between Rev and the nuclear pore complex during nuclear export
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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20 March 2017
Premature translational termination triggers mRNA decapping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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7 April 2017
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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7 April 2017
SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA Decay in Caenorhabditis elegans
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Looking at mRNA decay pathways through the window of molecular evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
SMG-5, required for C.elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
The role of Upf proteins in modulating the translation read-through of nonsense-containing transcripts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
Nonsense-mediated decay mutants do not affect programmed -1 frameshifting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
The Est1 subunit of yeast telomerase binds the Tlc1 telomerase RNA
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
smg-7 is required for mRNA surveillance in Caenorhabditis elegans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
Accumulation of mRNA coding for the ctf13p kinetochore subunit of Saccharomyces cerevisiae depends on the same factors that promote rapid decay of nonsense mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
Transport of macromolecules between the nucleus and the cytoplasm
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
29 September 2017
Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Versatile vectors to study recoding: conservation of rules between yeast and mammalian cells.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Cycloheximide resistance in yeast: the gene and its portein
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Firefly luciferase luminescence assays using scintillation counters for quantitation in transfected mammalian cells
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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29 September 2017
Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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2 June 2018
An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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2 June 2018
Decapping of stabilized, polyadenylated mRNA in yeast pab1 mutants
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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2 June 2018
Frameshift suppression Saccharomyces cerevisiae. II. Genetic properties of group II suppressors.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
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2 June 2018
The positive relationship between codon usage bias and translation initiation AUG context in Saccharomyces cerevisiae.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
27 November 2018
Analysis of mutations in the yeast mRNA decapping enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1405902
retrieved
27 November 2018
Genetic background affects relative nonsense mRNA accumulation in wild-type and upf mutant yeast strains
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16467471
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
mRNA surveillance by the Caenorhabditis elegans smg genes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16467471
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/EC.5.2.301-312.2006
1 reference
stated in
PubMed
PubMed ID
16467471
retrieved
1 December 2016
PMCID
1405902
0 references
PubMed ID
16467471
1 reference
stated in
PubMed
PubMed ID
16467471
retrieved
1 December 2016
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