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Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system
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scholarly article
1 reference
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PubMed
PubMed ID
23685439
retrieved
1 December 2016
title
Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system
(English)
1 reference
stated in
PubMed
PubMed ID
23685439
retrieved
1 December 2016
main subject
DEAH-box RNA helicase PRP16 YKR086W
1 reference
stated in
GOA release 2020-03-11
author
Zbigniew Warkocki
object named as
Zbigniew Warkocki
series ordinal
5
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Ingo Gregor
object named as
Ingo Gregor
series ordinal
8
0 references
Reinhard Georg Lührmann
series ordinal
11
object named as
Reinhard Lührmann
0 references
author name string
Thomas Ohrt
series ordinal
1
0 references
Peter Odenwälder
series ordinal
2
0 references
Julia Dannenberg
series ordinal
3
0 references
Mira Prior
series ordinal
4
0 references
Jana Schmitzová
series ordinal
6
0 references
Ramazan Karaduman
series ordinal
7
0 references
Jörg Enderlein
series ordinal
9
0 references
Patrizia Fabrizio
series ordinal
10
0 references
language of work or name
English
0 references
publication date
July 2013
0 references
published in
RNA
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stated in
PubMed
PubMed ID
23685439
retrieved
1 December 2016
volume
19
0 references
page(s)
902-15
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issue
7
0 references
cites work
Prp2-mediated protein rearrangements at the catalytic core of the spliceosome as revealed by dcFCCS.
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PubMed Central
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Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components
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Functional interactions between Prp8, Prp18, Slu7, and U5 snRNA during the second step of pre-mRNA splicing
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20 March 2017
A novel splicing factor, Yju2, is associated with NTC and acts after Prp2 in promoting the first catalytic reaction of pre-mRNA splicing
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Prp8 protein: at the heart of the spliceosome
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20 March 2017
How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing
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Functional and physical interactions between components of the Prp19p-associated complex
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20 March 2017
Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing
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PubMed Central
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20 March 2017
Mechanical devices of the spliceosome: motors, clocks, springs, and things
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20 March 2017
Spliceosome activation by PRP2 ATPase prior to the first transesterification reaction of pre-mRNA splicing
1 reference
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PubMed Central
reference URL
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20 March 2017
A general two-metal-ion mechanism for catalytic RNA
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20 March 2017
The final stages of spliceosome maturation require Spp2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing
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PubMed Central
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20 March 2017
Prp16p, Slu7p, and Prp8p interact with the 3' splice site in two distinct stages during the second catalytic step of pre-mRNA splicing
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PubMed Central
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Rearrangements within human spliceosomes captured after exon ligation.
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Structure, function and regulation of spliceosomal RNA helicases
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29 September 2017
The mechanism of the second step of pre-mRNA splicing
1 reference
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PubMed Central
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29 September 2017
Fluorescence cross-correlation spectroscopy reveals mechanistic insights into the effect of 2'-O-methyl modified siRNAs in living cells
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DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps
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29 September 2017
The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing
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PubMed Central
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29 September 2017
The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome
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PubMed Central
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29 September 2017
Cwc25 is a novel splicing factor required after Prp2 and Yju2 to facilitate the first catalytic reaction
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells
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PubMed Central
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29 September 2017
A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release
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PubMed Central
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29 September 2017
The Prp18 protein stabilizes the interaction of both exons with the U5 snRNA during the second step of pre-mRNA splicing
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PubMed Central
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29 September 2017
Insights into the mechanisms of splicing: more lessons from the ribosome
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29 September 2017
Interaction between a G-patch protein and a spliceosomal DEXD/H-box ATPase that is critical for splicing
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PubMed Central
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29 September 2017
Interaction of the yeast DExH-box RNA helicase prp22p with the 3' splice site during the second step of nuclear pre-mRNA splicing
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PubMed Central
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29 September 2017
Allele-specific genetic interactions between Prp8 and RNA active site residues suggest a function for Prp8 at the catalytic core of the spliceosome.
1 reference
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PubMed Central
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29 September 2017
Real-time enzyme kinetics monitored by dual-color fluorescence cross-correlation spectroscopy
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
Functional and physical interaction between the yeast splicing factors Slu7 and Prp18.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
Extensive interactions of PRP8 protein with the 5' and 3' splice sites during splicing suggest a role in stabilization of exon alignment by U5 snRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
SLU7 and a novel activity, SSF1, act during the PRP16-dependent step of yeast pre-mRNA splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
retrieved
29 September 2017
A putative ATP binding protein influences the fidelity of branchpoint recognition in yeast splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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29 September 2017
Dissection of the factor requirements for spliceosome disassembly and the elucidation of its dissociation products using a purified splicing system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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2 June 2018
The splice is right: guarantors of fidelity in pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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2 June 2018
Quantitative two-color fluorescence cross-correlation spectroscopy in the analysis of polymerase chain reaction
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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2 June 2018
Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
retrieved
2 June 2018
Synthetic lethal mutations suggest interactions between U5 small nuclear RNA and four proteins required for the second step of splicing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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2 June 2018
Deciphering 3'ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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27 November 2018
Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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27 November 2018
Repositioning of the reaction intermediate within the catalytic center of the spliceosome.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
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27 November 2018
How the molecule number is correctly quantified in two-color fluorescence cross-correlation spectroscopy: corrections for cross-talk and quenching in experiments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
retrieved
27 November 2018
Requirement for SLU7 in yeast pre-mRNA splicing is dictated by the distance between the branchpoint and the 3' splice site.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
retrieved
27 November 2018
A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683925
retrieved
27 November 2018
The U5 and U6 small nuclear RNAs as active site components of the spliceosome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23685439
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Direct measurement of a distinct correlation function by fluorescence cross correlation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23685439
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1261/RNA.039024.113
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4401188
Fatcat ID
release_gsqlsa4tg5axzgcwalrrzwsijy
1 reference
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Fatcat
reference URL
https://api.fatcat.wiki/v0/release/gsqlsa4tg5axzgcwalrrzwsijy
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
OpenCitations bibliographic resource ID
4401188
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4401188
PMCID
3683925
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4401188
PubMed ID
23685439
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4401188
ResearchGate publication ID
236919854
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