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The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site
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title
The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site
(English)
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author name string
Yongsheng Shi
series ordinal
1
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Crossref
James L. Manley
series ordinal
2
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Crossref
language of work or name
English
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stated in
PubMed
publication date
1 May 2015
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PubMed
published in
Genes & Development
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PubMed
volume
29
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PubMed
issue
9
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stated in
PubMed
page(s)
889-97
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PubMed
cites work
Efficient mRNA polyadenylation requires a ubiquitin-like domain, a zinc knuckle, and a RING finger domain, all contained in the Mpe1 protein
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The RBBP6/ZBTB38/MCM10 axis regulates DNA replication and common fragile site stability
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20 March 2017
Alternative cleavage and polyadenylation: the long and short of it
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20 March 2017
All's well that ends well: alternative polyadenylation and its implications for stem cell biology
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20 March 2017
U1 snRNP determines mRNA length and regulates isoform expression
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20 March 2017
Mechanisms and consequences of alternative polyadenylation
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20 March 2017
Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping
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20 March 2017
Hexameric architecture of CstF supported by CstF-50 homodimerization domain structure
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Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing
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HITS-CLIP yields genome-wide insights into brain alternative RNA processing
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20 March 2017
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Crystal structure of murine CstF-77: dimeric association and implications for polyadenylation of mRNA precursors
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An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries
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20 March 2017
Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d
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20 March 2017
Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase
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A mechanism for the regulation of pre-mRNA 3' processing by human cleavage factor Im
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Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein
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Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor
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Large-scale proteomic analysis of the human spliceosome
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20 March 2017
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination
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20 March 2017
Mpe1, a zinc knuckle protein, is an essential component of yeast cleavage and polyadenylation factor required for the cleavage and polyadenylation of mRNA.
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20 March 2017
Patterns of variant polyadenylation signal usage in human genes
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20 March 2017
Complex protein interactions within the human polyadenylation machinery identify a novel component
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20 March 2017
Human pre-mRNA cleavage factor Im is related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits
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Participation of the nuclear cap binding complex in pre-mRNA 3' processing
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20 March 2017
The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins
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20 March 2017
RNA recognition by the human polyadenylation factor CstF
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20 March 2017
Cleavage factor II of Saccharomyces cerevisiae contains homologues to subunits of the mammalian Cleavage/ polyadenylation specificity factor and exhibits sequence-specific, ATP-dependent interaction with precursor RNA.
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20 March 2017
Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors
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20 March 2017
The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3'-end formation
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20 March 2017
Cleavage and polyadenylation factor CPF specifically interacts with the pre-mRNA 3' processing signal AAUAAA
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20 March 2017
Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains
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The spliceosome: design principles of a dynamic RNP machine
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Comprehensive proteomic analysis of the human spliceosome
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The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression
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Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail
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PACT: cloning and characterization of a cellular p53 binding protein that interacts with Rb
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PACT is a negative regulator of p53 and essential for cell growth and embryonic development
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Integrating mRNA processing with transcription
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Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability
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Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs
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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
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Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
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RNA polymerase II and the integration of nuclear events
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Mechanism and regulation of mRNA polyadenylation
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7 April 2017
SR proteins and splicing control
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RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3' UTRs
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Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.
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CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing
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29 September 2017
Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease.
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29 September 2017
CFIm25 links alternative polyadenylation to glioblastoma tumour suppression.
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29 September 2017
Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal
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29 September 2017
Overlapping and distinct functions of CstF64 and CstF64τ in mammalian mRNA 3' processing
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29 September 2017
Overexpression of RBBP6, alone or combined with mutant TP53, is predictive of poor prognosis in colon cancer
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29 September 2017
Alternative cleavage and polyadenylation: extent, regulation and function
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Position-dependent splicing activation and repression by SR and hnRNP proteins rely on common mechanisms.
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29 September 2017
Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation
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29 September 2017
Alternative polyadenylation: new insights from global analyses
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29 September 2017
Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules
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29 September 2017
Autoregulation of TDP-43 mRNA levels involves interplay between transcription, splicing, and alternative polyA site selection.
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29 September 2017
The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.
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29 September 2017
De-regulation of the RBBP6 isoform 3/DWNN in human cancers
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29 September 2017
Signals for pre-mRNA cleavage and polyadenylation
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29 September 2017
Pre-mRNA 3'-end processing complex assembly and function
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29 September 2017
Ending the message: poly(A) signals then and now
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29 September 2017
The structure of human cleavage factor I(m) hints at functions beyond UGUA-specific RNA binding: a role in alternative polyadenylation and a potential link to 5' capping and splicing
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29 September 2017
Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
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29 September 2017
Essential role for the interaction between hnRNP H/F and a G quadruplex in maintaining p53 pre-mRNA 3'-end processing and function during DNA damage.
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29 September 2017
Developmental regulation of transcription initiation: more than just changing the actors
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29 September 2017
Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.
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29 September 2017
Recent advances in understanding the structure and function of general transcription factor TFIID.
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29 September 2017
A family of splice variants of CstF-64 expressed in vertebrate nervous systems
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29 September 2017
Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection
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29 September 2017
The general transcription machinery and general cofactors
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29 September 2017
The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Drosophila Sex-lethal protein mediates polyadenylation switching in the female germline
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcriptional program
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Polypyrimidine tract binding protein modulates efficiency of polyadenylation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Two distinct forms of the 64,000 Mr protein of the cleavage stimulation factor are expressed in mouse male germ cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
The cap and the 3' splice site similarly affect polyadenylation efficiency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
cDNA sequence and chromosomal localization of a novel human protein, RBQ-1 (RBBP6), that binds to the retinoblastoma gene product
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
The 64-kilodalton subunit of the CstF polyadenylation factor binds to pre-mRNAs downstream of the cleavage site and influences cleavage site location
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Molecular cloning of a human protein that binds to the retinoblastoma protein and chromosomal mapping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
Molecular analyses of two poly(A) site-processing factors that determine the recognition and efficiency of cleavage of the pre-mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
29 September 2017
ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
DNA damage induces targeted, genome-wide variation of poly(A) sites in budding yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
A core complex of CPSF73, CPSF100, and Symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
Molecular architecture of the human pre-mRNA 3' processing complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
Polyadenylation proteins CstF-64 and tauCstF-64 exhibit differential binding affinities for RNA polymers.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
A novel function for the U2AF 65 splicing factor in promoting pre-mRNA 3'-end processing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
U1 snRNP inhibits pre-mRNA polyadenylation through a direct interaction between U1 70K and poly(A) polymerase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
Four factors are required for 3'-end cleavage of pre-mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
Purification of the cleavage and polyadenylation factor involved in the 3'-processing of messenger RNA precursors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
2 June 2018
Cleavage factor Im is a key regulator of 3' UTR length.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
27 November 2018
Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
27 November 2018
Hu proteins regulate polyadenylation by blocking sites containing U-rich sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
27 November 2018
Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
27 November 2018
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421977
retrieved
27 November 2018
3' cleavage and polyadenylation of mRNA precursors in vitro requires a poly(A) polymerase, a cleavage factor, and a snRNP
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25934501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A multisubunit factor, CstF, is required for polyadenylation of mammalian pre-mRNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25934501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of the multisubunit cleavage-polyadenylation specificity factor from calf thymus
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25934501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Involvement of the carboxyl terminus of vertebrate poly(A) polymerase in U1A autoregulation and in the coupling of splicing and polyadenylation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25934501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
CPEB1 coordinates alternative 3′-UTR formation with translational regulation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25934501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/GAD.261974.115
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783221
OpenCitations bibliographic resource ID
783221
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783221
PMC publication ID
4421977
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783221
PubMed publication ID
25934501
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783221
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