(Q28272633)

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Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

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Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista (English)

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Denis Tikhonenkov

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26817772%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Vasily V Zlatogursky

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26817772%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

5

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11 June 2020

7

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26817772%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Patrick John Keeling

9

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11 June 2020

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Fabien Burki

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11 June 2020

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Maia Kaplan

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11 June 2020

Liudmila V Radaykina

6

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11 June 2020

Alexander P Mylnikov

8

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11 June 2020

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27 January 2016

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Proceedings of the Royal Society B

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11 June 2020

283

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11 June 2020

1823

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11 June 2020

20152802

0 references

Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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Picomonas judraskeda gen. et sp. nov.: the first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as 'picobiliphytes'

1 reference

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Ultrafast approximation for phylogenetic bootstrap

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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1 reference

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The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

1 reference

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20 March 2017

Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations

1 reference

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20 March 2017

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

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20 March 2017

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

1 reference

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20 March 2017

The endosymbiotic origin, diversification and fate of plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Phylogenomics reshuffles the eukaryotic supergroups

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Phylogenomics and the reconstruction of the tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

The evolution of photosynthesis in chromist algae through serial endosymbioses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

20 March 2017

The Eukaryotic Tree of Life from a Global Phylogenomic Perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

6 April 2017

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

7 April 2017

Acoelomorph flatworms are deuterostomes related to Xenoturbella

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

7 April 2017

Multiple origins of Heliozoa from flagellate ancestors: New cryptist subphylum Corbihelia, superclass Corbistoma, and monophyly of Haptista, Cryptista, Hacrobia and Chromista

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Genomic perspectives on the birth and spread of plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Bacterial proteins pinpoint a single eukaryotic root

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Endosymbiotic theory for organelle origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Selecting optimal partitioning schemes for phylogenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

The number, speed, and impact of plastid endosymbioses in eukaryotic evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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Distribution of the SELMA translocon in secondary plastids of red algal origin and predicted uncoupling of ubiquitin-dependent translocation from degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Dinoflagellate genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Protein targeting into secondary plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

The puzzle of plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Transit peptide diversity and divergence: A global analysis of plastid targeting signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

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Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Molecular phylogeny, scale evolution and taxonomy of centrohelid heliozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Phylogenetic position of Multicilia marina and the evolution of Amoebozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Phylogeny of the Centrohelida inferred from SSU rRNA, tubulins, and actin genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Molecular phylogeny of centrohelid heliozoa, a novel lineage of bikont eukaryotes that arose by ciliary loss

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

The single, ancient origin of chromist plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

29 September 2017

Reevaluating the green contribution to diatom genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

2 June 2018

Ancient gene paralogy may mislead inference of plastid phylogeny.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795036

2 June 2018

Protist phylogeny and the high-level classification of Protozoa

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

The influence of rate heterogeneity among sites on the time dependence of molecular rates

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

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1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES(1).

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

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1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2015.2802

21 January 2018

Centrohelida is still searching for a phylogenetic home: analyses of seven Raphidiophrys contractilis genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/26817772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromalveolate plastids: direct descent or multiple endosymbioses?

1 reference

https://pubmed.ncbi.nlm.nih.gov/26817772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective retention of chloroplasts by algivorous heliozoa: Fortuitous chloroplast symbiosis?

1 reference

https://pubmed.ncbi.nlm.nih.gov/26817772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1098/RSPB.2015.2802

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26817772%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26817772%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26817772%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

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