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Protein structure alignment beyond spatial proximity
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1 reference
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Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
title
Protein structure alignment beyond spatial proximity
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
main subject
protein structure
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author
Sheng Wang
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
author name string
Jianzhu Ma
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
Jian Peng
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
Jinbo Xu
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
language of work or name
English
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publication date
1 January 2013
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
published in
Scientific Reports
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
volume
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
page(s)
1448
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
copyright license
Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
start time
14 March 2013
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
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How significant is a protein structure similarity with TM-score = 0.5?
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20 March 2017
TM-align: a protein structure alignment algorithm based on the TM-score
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20 March 2017
CDD: a Conserved Domain Database for protein classification
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20 March 2017
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
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20 March 2017
Protein homology detection by HMM-HMM comparison
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20 March 2017
FATCAT: a web server for flexible structure comparison and structure similarity searching
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20 March 2017
LGA: A method for finding 3D similarities in protein structures
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20 March 2017
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3596798
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20 March 2017
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20 March 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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20 March 2017
Protein structure comparison by alignment of distance matrices
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20 March 2017
SCOP: a structural classification of proteins database for the investigation of sequences and structures
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20 March 2017
Protein structure alignment
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3596798
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20 March 2017
Amino acid substitution matrices from protein blocks
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PubMed Central
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20 March 2017
PROMALS3D: a tool for multiple protein sequence and structure alignments
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7 April 2017
Scoring function for automated assessment of protein structure template quality
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7 April 2017
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29 September 2017
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29 September 2017
Iterative refinement of structure-based sequence alignments by Seed Extension
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29 September 2017
Advances and pitfalls of protein structural alignment
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29 September 2017
CLePAPS: fast pair alignment of protein structures based on conformational letters.
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29 September 2017
Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.
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29 September 2017
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29 September 2017
Matt: local flexibility aids protein multiple structure alignment.
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29 September 2017
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29 September 2017
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29 September 2017
Comparative analysis of protein structure alignments
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29 September 2017
A new progressive-iterative algorithm for multiple structure alignment.
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29 September 2017
A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
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29 September 2017
Multiple flexible structure alignment using partial order graphs.
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29 September 2017
FAST: a novel protein structure alignment algorithm.
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29 September 2017
FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web
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29 September 2017
CE-MC: a multiple protein structure alignment server.
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29 September 2017
MATRAS: A program for protein 3D structure comparison
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29 September 2017
ProSup: a refined tool for protein structure alignment.
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29 September 2017
Protein structure alignment using environmental profiles.
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29 September 2017
The FSSP database of structurally aligned protein fold families
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29 September 2017
MUSTANG: a multiple structural alignment algorithm.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3596798
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2 June 2018
3DCoffee: combining protein sequences and structures within multiple sequence alignments
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21 January 2018
MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs.
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21 January 2018
MALISAM: a database of structurally analogous motifs in proteins
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21 January 2018
A solution for the best rotation to relate two sets of vectors
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21 January 2018
SABmark--a benchmark for sequence alignment that covers the entire known fold space
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23486213
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/SREP01448
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
Dimensions Publication ID
1016407522
0 references
PMC publication ID
3596798
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
PubMed publication ID
23486213
1 reference
stated in
Europe PubMed Central
PMC publication ID
3596798
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23486213%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
ResearchGate publication ID
236042514
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