(Q33299764)

25 July 2017

title

Accuracy of structure-based sequence alignment of automatic methods (English)

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25 July 2017

1 reference

1 reference

2

Byungkook Lee

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25 July 2017

Changhoon Kim

1

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25 July 2017

publication date

20 September 2007

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25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

355

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

20 September 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Comparison of sequence and structure alignments for protein domains.

21 June 2018

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21 June 2018

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PALI-a database of Phylogeny and ALIgnment of homologous protein structures

21 June 2018

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21 June 2018

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Protein structure alignment using environmental profiles.

21 June 2018

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

21 June 2018

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CAMPASS: a database of structurally aligned protein superfamilies.

21 June 2018

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Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Optimum superimposition of protein structures: ambiguities and implications.

21 June 2018

1 reference

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The structural alignment between two proteins: is there a unique answer?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Threading a database of protein cores

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Development and validation of a consistency based multiple structure alignment algorithm.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

PALI: a database of alignments and phylogeny of homologous protein structures

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Structure comparison and structure patterns.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Large-scale comparison of protein sequence alignment algorithms with structure alignments

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

Evaluation of protein fold comparison servers

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2039753

SATCHMO: sequence alignment and tree construction using hidden Markov models

31 October 2018

1 reference

12 December 2020

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

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12 December 2020

Measures of threading specificity and accuracy

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12 December 2020

SABmark--a benchmark for sequence alignment that covers the entire known fold space

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12 December 2020

Identifiers

DOI

10.1186/1471-2105-8-355

1 reference

25 July 2017

DBLP publication ID

journals/bmcbi/KimL07a

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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25 July 2017

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