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Approaches and tools for modeling signaling pathways and calcium dynamics in neurons
scientific article (publication date: 15 November 2013)
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Europe PubMed Central
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3830683
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2 March 2020
title
Approaches and tools for modeling signaling pathways and calcium dynamics in neurons
(English)
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Europe PubMed Central
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3830683
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2 March 2020
author
Kim T Blackwell
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1
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Europe PubMed Central
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3830683
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2 March 2020
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K T Blackwell
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English
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publication date
3 June 2013
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2 March 2020
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Journal of Neuroscience Methods
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3830683
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2 March 2020
volume
220
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2 March 2020
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2
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2 March 2020
page(s)
131-140
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Europe PubMed Central
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3830683
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2 March 2020
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
Stochastic simulation of activation in the G-protein cascade of phototransduction
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
A model of calcium dynamics in cardiac myocytes based on the kinetics of ryanodine-sensitive calcium channels
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
Properties of intracellular Ca2+ waves generated by a model based on Ca(2+)-induced Ca2+ release
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
Deviations from Michaelis-Menten kinetics. The possibility of complicated curves for simple kinetic schemes and the computer fitting of experimental data for acetylcholinesterase, acid phosphatase, adenosine deaminase, arylsulphatase, benzylamine ox
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
Light adaptation in turtle cones. Testing and analysis of a model for phototransduction
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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29 September 2017
Crosstalk and signaling switches in mitogen-activated protein kinase cascades
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3 June 2018
A computational model to investigate astrocytic glutamate uptake influence on synaptic transmission and neuronal spiking
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3 June 2018
Models of Excitation–Contraction Coupling in Cardiac Ventricular Myocytes
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3 June 2018
Irreversible cell-cycle transitions are due to systems-level feedback.
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PubMed Central
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3 June 2018
Genetic demonstration of a role for PKA in the late phase of LTP and in hippocampus-based long-term memory
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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3 June 2018
DARPP-32, a dopamine- and adenosine 3':5'-monophosphate-regulated phosphoprotein: regional, tissue, and phylogenetic distribution
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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3 June 2018
Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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3 June 2018
A stochastic signaling network mediates the probabilistic induction of cerebellar long-term depression
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27 November 2018
Spatiotemporal maps of CaMKII in dendritic spines.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Sequestration of CaMKII in dendritic spines in silico
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Diffusion and extrusion shape standing calcium gradients during ongoing parallel fiber activity in dendrites of Purkinje neurons
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Accurate implementation of leaping in space: the spatial partitioned-leaping algorithm
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Subcellular arrangement of molecules for 2-arachidonoyl-glycerol-mediated retrograde signaling and its physiological contribution to synaptic modulation in the striatum.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Kinase suppressor of Ras1 compartmentalizes hippocampal signal transduction and subserves synaptic plasticity and memory formation.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
On the validity of the quasi-steady state approximation of bimolecular reactions in solution.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Paired turbulence and light do not produce a supralinear calcium increase in Hermissenda
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Two Rate-Limiting Steps in the Kinetic Mechanism of the Serine/Threonine Specific Protein Kinase ERK2: A Case of Fast Phosphorylation Followed by Fast Product Release
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Mutational analysis of dendritic Ca2+ kinetics in rodent Purkinje cells: role of parvalbumin and calbindin D28k.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Neuronal endoplasmic reticulum acts as a single functional Ca2+ store shared by ryanodine and inositol-1,4,5-trisphosphate receptors as revealed by intra-ER [Ca2+] recordings in single rat sensory neurones
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3830683
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27 November 2018
Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability
1 reference
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A quantitative account of the activation steps involved in phototransduction in amphibian photoreceptors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23743449
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.JNEUMETH.2013.05.008
1 reference
stated in
Europe PubMed Central
PMC publication ID
3830683
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23743449%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PMC publication ID
3830683
1 reference
stated in
Europe PubMed Central
PMC publication ID
3830683
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23743449%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PubMed publication ID
23743449
1 reference
stated in
Europe PubMed Central
PMC publication ID
3830683
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23743449%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
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