(Q28536035)

5

0 references

Alessandra Carbone

object named as

Alessandra Carbone

6

0 references

author name string

Anne Lopes

1

0 references

Viktoriya Dimitrova

3

0 references

Elodie Laine

PLOS Computational Biology

4

0 references

language of work or name

English

0 references

publication date

2013

0 references

published in

0 references

volume

9

0 references

issue

12

0 references

page(s)

e1003369

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

5 December 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A structure-based benchmark for protein-protein binding affinity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein-Protein Docking Benchmark 2.0: an update

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Principles of protein-protein interactions

19 March 2017

1 reference

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From molecular to modular cell biology

19 March 2017

1 reference

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7 April 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Cellular crowding imposes global constraints on the chemistry and evolution of proteomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Arbitrary protein-protein docking targets biologically relevant interfaces.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

InterEvol database: exploring the structure and evolution of protein complex interfaces.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

29 September 2017

1 reference

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Towards the prediction of protein interaction partners using physical docking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein binding specificity versus promiscuity.

29 September 2017

1 reference

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Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

29 September 2017

1 reference

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Protein-protein docking tested in blind predictions: the CAPRI experiment

29 September 2017

1 reference

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Docking by structural similarity at protein-protein interfaces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Accounting for conformational changes during protein-protein docking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Present and future challenges and limitations in protein-protein docking

29 September 2017

1 reference

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The courtship of proteins: understanding the encounter complex

29 September 2017

1 reference

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DOCKGROUND protein-protein docking decoy set.

29 September 2017

1 reference

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Replica exchange simulations of transient encounter complexes in protein-protein association.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein protein interaction inhibition (2P2I) combining high throughput and virtual screening: Application to the HIV-1 Nef protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Flexible protein-protein docking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Structure, function, and evolution of transient and obligate protein-protein interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Inhibiting protein-protein interactions using designed molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Free energy landscapes of encounter complexes in protein-protein association

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

The Negatome database: a reference set of non-interacting protein pairs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

A coarse-grained potential for fold recognition and molecular dynamics simulations of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Investigating the local flexibility of functional residues in hemoproteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein-protein docking with a reduced protein model accounting for side-chain flexibility

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Protein-protein interaction networks and biology--what's the connection?

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

ClusPro: an automated docking and discrimination method for the prediction of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Identification of protein interaction partners and protein-protein interaction sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Identification of protein-protein interaction sites from docking energy landscapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Improving the accuracy of an affinity prediction method by using statistics on shape complementarity between proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Exploring the charge space of protein-protein association: a proteomic study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

ATTRACT: protein-protein docking in CAPRI using a reduced protein model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Accounting for loop flexibility during protein-protein docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Assessment of blind predictions of protein-protein interactions: current status of docking methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

The Relationship Between Sequence and Interaction Divergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003369

Protein docking using spherical polar Fourier correlations.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854762

Locating the active sites of enzymes using mechanical properties

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24339765

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detection and refinement of encounter complexes for protein-protein docking: taking account of macromolecular crowding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24339765

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular simulations of diffusion and association in multimacromolecular systems

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24339765

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003369

1 reference

journals/ploscb/LopesSDLPC13

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

24339765

1 reference