(Q28550960)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26566239%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Nathan D Price

series ordinal

2

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PLOS Computational Biology

7 June 2020

author name string

Nathan D Price

series ordinal

2

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language of work or name

English

0 references

publication date

November 2015

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published in

1 reference

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7 June 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26566239%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26566239%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

e1004530

1 reference

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Creative Commons Attribution 4.0 International

7 June 2020

copyright license

start time

13 November 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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19 March 2017

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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

19 March 2017

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

19 March 2017

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Further developments towards a genome-scale metabolic model of yeast

19 March 2017

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High-throughput generation, optimization and analysis of genome-scale metabolic models

19 March 2017

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Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

19 March 2017

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BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

19 March 2017

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A protocol for generating a high-quality genome-scale metabolic reconstruction

19 March 2017

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Systems-level engineering of nonfermentative metabolism in yeast

19 March 2017

1 reference

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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

19 March 2017

1 reference

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ChEBI: a database and ontology for chemical entities of biological interest

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

19 March 2017

1 reference

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Identification and metabolic role of the mitochondrial aspartate-glutamate transporter in Saccharomyces cerevisiae.

19 March 2017

1 reference

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The Pathway Tools software

19 March 2017

1 reference

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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

19 March 2017

1 reference

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The PEL1 gene (renamed PGS1) encodes the phosphatidylglycero-phosphate synthase of Saccharomyces cerevisiae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Exploring the metabolic and genetic control of gene expression on a genomic scale

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

7 April 2017

1 reference

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Comparison of the predicted and observed secondary structure of T4 phage lysozyme

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

7 April 2017

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Biomass composition: the "elephant in the room" of metabolic modelling

21 January 2018

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Genome scale models of yeast: towards standardized evaluation and consistent omic integration

29 September 2017

1 reference

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Transparency in metabolic network reconstruction enables scalable biological discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Understanding carbon catabolite repression in Escherichia coli using quantitative models.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

fastGapFill: efficient gap filling in metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

d-OptCom: Dynamic multi-level and multi-objective metabolic modeling of microbial communities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection

29 September 2017

1 reference

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Revising the Representation of Fatty Acid, Glycerolipid, and Glycerophospholipid Metabolism in the Consensus Model of Yeast Metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Dead end metabolites--defining the known unknowns of the E. coli metabolic network

29 September 2017

1 reference

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Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

29 September 2017

1 reference

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Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

29 September 2017

1 reference

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Gap detection for genome-scale constraint-based models

29 September 2017

1 reference

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Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions

29 September 2017

1 reference

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YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Engineering strategy of yeast metabolism for higher alcohol production

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Fifteen years of large scale metabolic modeling of yeast: developments and impacts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

An integrated approach to characterize genetic interaction networks in yeast metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Computationally efficient flux variability analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

The biomass objective function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Exploring genetic interactions and networks with yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Fatty acid synthesis and elongation in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

BioMet Toolbox: genome-wide analysis of metabolism

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

Optimizing genome-scale network reconstructions

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004530

Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004530

Optimization of fed-batch Saccharomyces cerevisiae fermentation using dynamic flux balance models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004530

Why does yeast ferment? A flux balance analysis study

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004530

Assimilating genome-scale metabolic reconstructions with modelBorgifier.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004530

Nutritional requirements of the BY series ofSaccharomyces cerevisiaestrains for optimum growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004530

Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643975

SBMLToolbox: an SBML toolbox for MATLAB users

27 November 2018

1 reference

12 December 2020

Multiple knockout analysis of genetic robustness in the yeast metabolic network

1 reference

12 December 2020

A constraint-based model analysis of the metabolic consequences of increased NADPH oxidation in Saccharomyces cerevisiae

1 reference

12 December 2020

Glucose repression in Saccharomyces cerevisiae is related to the glucose concentration rather than the glucose flux

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1004530

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26566239%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/HeavnerP15

7 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26566239%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

26566239

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26566239%20AND%20SRC:MED&resulttype=core&format=json