(Q28652755)

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The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems

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5 March 2020

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16 October 2023

The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems (English)

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5 March 2020

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agro-ecosystem management

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16 September 2019

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22 October 2019

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4 November 2019

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4 July 2020

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soil microbiology

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greenhouse effect

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soil microbiota

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Joanna M. Clark

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5 March 2020

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5 March 2020

Christos Gougoulias

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Christos Gougoulias

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6 March 2014

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5 March 2020

1 September 2014

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4 July 2020

16 October 2023

Journal of the Science of Food and Agriculture

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20 June 2019

16 September 2019

22 October 2019

4 November 2019

Europe PubMed Central

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5 March 2020

4 July 2020

16 October 2023

94

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5 March 2020

2362-2371

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5 March 2020

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Creative Commons Attribution 4.0 International

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20 June 2019

Europe PubMed Central

16 September 2019

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Europe PubMed Central

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Europe PubMed Central

16 October 2023

copyright status

0 references

Breeding crop plants with deep roots: their role in sustainable carbon, nutrient and water sequestration

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Contributions to accelerating atmospheric CO2 growth from economic activity, carbon intensity, and efficiency of natural sinks

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17 March 2017

What have we learned from 15 years of free-air CO2 enrichment (FACE)? A meta-analytic review of the responses of photosynthesis, canopy properties and plant production to rising CO2

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17 March 2017

A genomic view of methane oxidation by aerobic bacteria and anaerobic archaea

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17 March 2017

Microautoradiographic study of Rhodocyclus-related polyphosphate-accumulating bacteria in full-scale enhanced biological phosphorus removal plants

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17 March 2017

Soil carbon sequestration impacts on global climate change and food security

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17 March 2017

Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model

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17 March 2017

Enhancing soil carbon storage for carbon remediation: potential contributions and constraints by microbes

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7 April 2017

Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines.

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3 June 2018

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

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3 June 2018

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

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3 June 2018

Persistence of soil organic matter as an ecosystem property

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3 June 2018

Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil

1 reference

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3 June 2018

High diversity and abundance of putative polyphosphate-accumulating Tetrasphaera-related bacteria in activated sludge systems

1 reference

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3 June 2018

Microorganisms and climate change: terrestrial feedbacks and mitigation options

1 reference

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3 June 2018

Ecosystem response to elevated CO(2) levels limited by nitrogen-induced plant species shift.

1 reference

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3 June 2018

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

1 reference

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3 June 2018

Temperature-associated increases in the global soil respiration record.

1 reference

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3 June 2018

Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by polychlorinated biphenyls as revealed by stable isotope probing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Identification of a novel toluene-degrading bacterium from the candidate phylum TM7, as determined by DNA stable isotope probing

1 reference

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3 June 2018

Elevated CO2 stimulates marsh elevation gain, counterbalancing sea-level rise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

DNA-based stable isotope probing enables the identification of active bacterial endophytes in potatoes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Microbial contributions to climate change through carbon cycle feedbacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

The microbial engines that drive Earth's biogeochemical cycles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Novel uncultured Chloroflexi dechlorinate perchloroethene to trans-dichloroethene in tidal flat sediments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Effect of incubation conditions on the enrichment of pyrene-degrading bacteria identified by stable-isotope probing in an aged, PAH-contaminated soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Microbial stress-response physiology and its implications for ecosystem function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Methodological considerations for the use of stable isotope probing in microbial ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Mycorrhizas and soil structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

The role of root exudates in rhizosphere interactions with plants and other organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Temperature sensitivity of soil carbon decomposition and feedbacks to climate change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Rising atmospheric CO2 reduces sequestration of root-derived soil carbon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

RNA stable isotope probing, a novel means of linking microbial community function to phylogeny.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Stable-isotope probing as a tool in microbial ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Combined microautoradiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

In situ visualization of high genetic diversity in a natural microbial community

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

3 June 2018

In situ stable isotope probing of methanogenic archaea in the rice rhizosphere.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Detecting active methanogenic populations on rice roots using stable isotope probing

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Soil organic carbon pools in the northern circumpolar permafrost region

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Trends in the sources and sinks of carbon dioxide

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Soil organic matter turnover is governed by accessibility not recalcitrance

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

A history of research on the link between (micro)aggregates, soil biota, and soil organic matter dynamics

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Factoring out natural and indirect human effects on terrestrial carbon sources and sinks

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Long-term sensitivity of soil carbon turnover to warming

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Ecosystem CO2 fluxes of arbuscular and ectomycorrhizal dominated vegetation types are differentially influenced by precipitation and temperature.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Acclimation to temperature and temperature sensitivity of metabolism by ectomycorrhizal fungi

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Divergent effects of elevated CO2, N fertilization, and plant diversity on soil C and N dynamics in a grassland field experiment

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Nitrogen cycling during seven years of atmospheric CO2 enrichment in a scrub oak woodland.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Climate–Carbon Cycle Feedback Analysis: Results from the C4MIP Model Intercomparison

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Integrating plant-soil interactions into global carbon cycle models

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Impact of Global Warming on Soil Organic Carbon

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Selective stimulation of type I methanotrophs in a rice paddy soil by urea fertilization revealed by RNA-based stable isotope probing

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Resource availability influences the diversity of a functional group of heterotrophic soil bacteria

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

13CO2 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Structure and activity of bacterial community inhabiting rice roots and the rhizosphere

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Activity and composition of methanotrophic bacterial communities in planted rice soil studied by flux measurements, analyses of pmoA gene and stable isotope probing of phospholipid fatty acids.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Ecophysiology of abundant denitrifying bacteria in activated sludge.

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Synergies between the mitigation of, and adaptation to, climate change in agriculture

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Carbon sequestration in croplands: the potential in Europe and the global context

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Ectomycorrhizal fungi from Alaska and Pennsylvania: adaptation of mycelial respiratory response to temperature?

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Soil carbon sequestration to mitigate climate change: a critical re-examination to identify the true and the false

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Two decades of terrestrial carbon fluxes from a carbon cycle data assimilation system (CCDAS)

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Stable isotopes reveal widespread anaerobic methane oxidation across latitude and peatland type

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

27 November 2018

Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283042

27 November 2018

A warm response by soils

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Soil temperature affects carbon allocation within arbuscular mycorrhizal networks and carbon transport from plant to fungus

1 reference

https://api.crossref.org/works/10.1002%2FJSFA.6577

21 January 2018

Rhizodeposition shapes rhizosphere microbial community structure in organic soil

1 reference

https://pubmed.ncbi.nlm.nih.gov/24425529

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy

1 reference

https://pubmed.ncbi.nlm.nih.gov/24425529

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/24425529

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Allocation of plant carbon to foraging and storage in arbuscular mycorrhizal fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/24425529

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cross-feeding of methane carbon among bacteria on rice roots revealed by DNA-stable isotope probing

1 reference

https://pubmed.ncbi.nlm.nih.gov/24425529

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

1 reference

https://pubmed.ncbi.nlm.nih.gov/24425529

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/JSFA.6577

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24425529%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24425529%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24425529%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

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