(Q28681948)

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Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

scientific article (publication date: May 2012)

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scholarly article

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Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments (English)

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computational biology

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based on heuristic

inferred from title

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Alexey I. Nesvizhskii

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Alexey I Nesvizhskii

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language of work or name

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publication date

May 2012

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12

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10

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1639-55

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Analyzing proteomes and protein function using graphical comparative analysis of tandem mass spectrometry results.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Making sense of high-throughput protein-protein interaction data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Guidelines for the next 10 years of proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Interpretation of shotgun proteomic data: the protein inference problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Assessing the limits of genomic data integration for predicting protein networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Multidimensional protein identification technology: current status and future prospects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Conserved patterns of protein interaction in multiple species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

The MIPS mammalian protein-protein interaction database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

The ABC's (and XYZ's) of peptide sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Analyzing yeast protein-protein interaction data obtained from different sources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

Protein interactions: two methods for assessment of the reliability of high throughput observations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

What does it mean to identify a protein in proteomics?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

3 June 2018

An integrated mass spectrometric and computational framework for the analysis of protein interaction networks.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Spectral index for assessment of differential protein expression in shotgun proteomics.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Gaining confidence in high-throughput protein interaction networks

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Probabilistic model of the human protein-protein interaction network

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100537

21 January 2018

Random forest similarity for protein-protein interaction prediction from multiple sources.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

27 November 2018

Assessment of the reliability of protein-protein interactions and protein function prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3744239

27 November 2018

A probabilistic functional network of yeast genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22611043

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The study of macromolecular complexes by quantitative proteomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/22611043

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PMIC.201100537

0 references

PMC publication ID

0 references

PubMed publication ID

0 references

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