(Q28740650)

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Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results

scientific article (publication date: 2011)

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scholarly article

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Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results (English)

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high-throughput sequencing

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based on heuristic

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Isidore Rigoutsos

object named as

Isidore Rigoutsos

4

author given names

Isidore

author last names

Rigoutsos

1 reference

14 December 2023

3

object named as

Laxmi Parida

author given names

Laxmi

author last names

Parida

1 reference

14 December 2023

1

object named as

Niina Haiminen

author given names

Niina

author last names

Haiminen

1 reference

14 December 2023

author name string

David N Kuhn

2

author given names

David N

author last names

Kuhn

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14 December 2023

language of work or name

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publication date

2011

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6

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9

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e24182

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copyright license

Creative Commons Attribution 4.0 International

7 September 2011

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April 2022 Public Data File from Crossref

copyright status

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Comparing de novo genome assembly: the long and short of it

1 reference

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1 reference

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17 March 2017

Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

1 reference

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1 reference

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Sequencing technologies - the next generation

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Basic local alignment search tool

1 reference

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DNA sequencing with chain-terminating inhibitors

1 reference

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17 March 2017

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1 reference

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7 April 2017

Next-generation DNA sequencing

1 reference

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7 April 2017

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

1 reference

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7 April 2017

Assembly algorithms for next-generation sequencing data

1 reference

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3 June 2018

Aggressive assembly of pyrosequencing reads with mates

1 reference

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3 June 2018

Gene-boosted assembly of a novel bacterial genome from very short reads

1 reference

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3 June 2018

Sequencing of natural strains of Arabidopsis thaliana with short reads

1 reference

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De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

1 reference

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3 June 2018

Short read fragment assembly of bacterial genomes

1 reference

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1 reference

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1 reference

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Extending assembly of short DNA sequences to handle error.

1 reference

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De Novo Next Generation Sequencing of Plant Genomes

1 reference

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21 January 2018

Identifiers

10.1371/JOURNAL.PONE.0024182

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2011PLoSO...624182H

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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