(Q28743153)

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Molecular evolution of the vertebrate TLR1 gene family--a complex history of gene duplication, gene conversion, positive selection and co-evolution

scientific article (publication date: 28 May 2011)

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Molecular evolution of the vertebrate TLR1 gene family--a complex history of gene duplication, gene conversion, positive selection and co-evolution (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

0 references

toll-like receptor

0 references

gene duplication

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Jacqueline Smith

4

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2 February 2020

6

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2 February 2020

author name string

Nicholas D Temperley

2

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2 February 2020

Liming Ren

3

1 reference

Europe PubMed Central

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2 February 2020

Ning Li

5

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Europe PubMed Central

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2 February 2020

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publication date

28 May 2011

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Europe PubMed Central

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2 February 2020

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

11

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Europe PubMed Central

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2 February 2020

1

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149

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Europe PubMed Central

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2 February 2020

describes a project that uses

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer

1 reference

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16 March 2017

Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense

1 reference

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16 March 2017

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

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16 March 2017

Patterns of positive selection in six Mammalian genomes

1 reference

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16 March 2017

The evolutionary history of the CD209 (DC-SIGN) family in humans and non-human primates

1 reference

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16 March 2017

Evolution of the chicken Toll-like receptor gene family: a story of gene gain and gene loss

1 reference

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16 March 2017

Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide

1 reference

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16 March 2017

Clustal W and Clustal X version 2.0

1 reference

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16 March 2017

Crystal structure of the TLR4-MD-2 complex with bound endotoxin antagonist Eritoran

1 reference

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16 March 2017

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

The evolution of vertebrate Toll-like receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Toll-like receptor signalling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

The origin of new genes: glimpses from the young and old

1 reference

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16 March 2017

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Innate immune recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Automated finishing with autofinish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Statistical methods for detecting molecular adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Consed: a graphical tool for sequence finishing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Phylogenetic methods come of age: testing hypotheses in an evolutionary context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

Amino acid substitution matrices from protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

16 March 2017

DAMBE: software package for data analysis in molecular biology and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

7 April 2017

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

7 April 2017

Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

7 April 2017

The probability of duplicate gene preservation by subfunctionalization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

7 April 2017

Avian toll-like receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

Adaptation and constraint at Toll-like receptors in primates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

Human TLRs 10 and 1 share common mechanisms of innate immune sensing but not signaling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

Gene conversion limits divergence of mammalian TLR1 and TLR6.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

Combinational recognition of bacterial lipoproteins and peptidoglycan by chicken Toll-like receptor 2 subfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

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Construction and characterization of a duck bacterial artificial chromosome library

1 reference

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CAPS: coevolution analysis using protein sequences.

1 reference

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3 June 2018

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1 reference

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3 June 2018

Recognition and signaling by toll-like receptors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.

1 reference

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3 June 2018

Induction of a novel chicken Toll-like receptor following Salmonella enterica serovar Typhimurium infection.

1 reference

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3 June 2018

Expression patterns of chicken Toll-like receptor mRNA in tissues, immune cell subsets and cell lines.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125219

3 June 2018

Positive selection on the human genome.

1 reference

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3 June 2018

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1 reference

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1 reference

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1 reference

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1 reference

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3 June 2018

Natural selection in the TLR-related genes in the course of primate evolution

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-149

21 January 2018

The differential evolutionary dynamics of avian cytokine and TLR gene classes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-149

21 January 2018

The central leucine-rich repeat region of chicken TLR16 dictates unique ligand specificity and species-specific interaction with TLR2.

1 reference

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21 January 2018

Data incongruence and the problem of avian louse phylogeny

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-149

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1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-149

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1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-149

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Statistical tests for detecting gene conversion.

1 reference

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Population-genetic models of the fates of duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/21619680

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based on heuristic

inferred from PubMed ID database lookup

The avian Toll-Like receptor pathway—Subtle differences amidst general conformity

1 reference

https://pubmed.ncbi.nlm.nih.gov/21619680

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-11-149

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-149

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21619680%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

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