(Q28762012)

English

Comparative evolutionary histories of the fungal chitinase gene family reveal non-random size expansions and contractions due to adaptive natural selection

scientific article (publication date: 18 March 2008)

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scholarly article

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Comparative evolutionary histories of the fungal chitinase gene family reveal non-random size expansions and contractions due to adaptive natural selection (English)

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Has domain(s) with predicted DNA binding, chromatin binding activity

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Putative chitinase

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Class V chitinase

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Putative class V chitinase

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Putative chitinase

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Endochitinase A

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Putative chitinase

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Putative endochitinase

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Putative chitinase

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Putative chitinase

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Putative chitinase

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Putative chitinase

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Putative chitinase

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Putative chitinase

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Putative chitinase

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Putative chitinase

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Putative class V chitinase

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2

object named as

Jan Stenlid

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Magnus Karlsson

1

object named as

Magnus Karlsson

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language of work or name

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publication date

18 March 2008

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Evolutionary Bioinformatics

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4

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47-60

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Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

CDD: a Conserved Domain Database for protein classification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

1 reference

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16 March 2017

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

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16 March 2017

The genome sequence of the filamentous fungus Neurospora crassa

1 reference

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16 March 2017

Functional profiling of the Saccharomyces cerevisiae genome

1 reference

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16 March 2017

Structural insights into the catalytic mechanism of a family 18 exo-chitinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Glycoside hydrolases and glycosyltransferases. Families, modules, and implications for genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Structure of a two-domain chitotriosidase from Serratia marcescens at 1.9-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Crystal structures of hevamine, a plant defence protein with chitinase and lysozyme activity, and its complex with an inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Chitinase is required for cell separation during growth of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

A classification of glycosyl hydrolases based on amino acid sequence similarities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

The rapid generation of mutation data matrices from protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

16 March 2017

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

7 April 2017

InterProScan--an integration platform for the signature-recognition methods in InterPro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

7 April 2017

Dating divergences in the Fungal Tree of Life: review and new analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

7 April 2017

CAFE: a computational tool for the study of gene family evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

7 April 2017

Molecular data from 27 proteins do not support a Precambrian origin of land plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

The evolution of the pheromonal signal system and its potential role for reproductive isolation in heterothallic neurospora

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Cloning and expression analysis of a chitinase gene Crchi1 from the mycoparasitic fungus Clonostachys rosea (syn. Gliocladium roseum).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Natural history and evolutionary principles of gene duplication in fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Review of fungal chitinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Evolution of reproductive proteins from animals and plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Estimating the tempo and mode of gene family evolution from comparative genomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Overexpression and characterization of a novel chitinase from Trichoderma atroviride strain P1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Biocontrol mechanisms of Trichoderma strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Comparative evolutionary histories of chitinase genes in the Genus zea and Family poaceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Fungal cell wall chitinases and glucanases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Physiological aspects of chitin catabolism in marine bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Regulation and cloning of microbial chitinase genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Yeast killer systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Microbial hydrolysis of polysaccharides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Human pathogeneic fungi and their close nonpathogenic relatives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

The plasmid-encoded killer system of Kluyveromyces lactis: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

3 June 2018

Molecular cloning, characterization, and expression studies of a novel chitinase gene (ech30) from the mycoparasite Trichoderma atroviride strain P1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

27 November 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614207

27 November 2018

Cloning and phylogenetic analysis of the chitinase gene from the facultative pathogen Paecilomyces lilacinus

1 reference

https://pubmed.ncbi.nlm.nih.gov/19204807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of nucleotide substitution rates in Eurotiomycete fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/19204807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chitinase gene of the dimorphic mycopathogen, Nomuraea rileyi

1 reference

https://pubmed.ncbi.nlm.nih.gov/19204807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Addition of substrate-binding domains increases substrate-binding capacity and specific activity of a chitinase from Trichoderma harzianum

1 reference

https://pubmed.ncbi.nlm.nih.gov/19204807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant chitinases use two different hydrolytic mechanisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/19204807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning of the gene Lecanicillium psalliotae chitinase Lpchi1 and identification of its potential role in the biocontrol of root-knot nematode Meloidogyne incognita

1 reference

https://pubmed.ncbi.nlm.nih.gov/19204807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.4137/EBO.S604

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