(Q29346664)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

main subject

Shewanella oneidensis

object named as

Shewanella oneidensis

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Margaret F Romine

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Dmitry Rodionov

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Xiaoqing Li

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Qingxiang Zheng

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Pavel S Novichkov

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Samantha Reed

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

James K Fredrickson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Chen Yang

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Andrei L Osterman

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

language of work or name

English

0 references

publication date

17 August 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

11 February 2020

number of pages

13

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

volume

286

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

issue

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

page(s)

35782-35794

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

11 February 2020

cites work

1 reference

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Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation

11 April 2017

1 reference

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Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and entner-doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain.

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Dendroscope: An interactive viewer for large phylogenetic trees

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

WebLogo: A Sequence Logo Generator

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

MUSCLE: multiple sequence alignment with high accuracy and high throughput

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Sialic acid transport and catabolism are cooperatively regulated by SiaR and CRP in nontypeable Haemophilus influenzae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

MicrobesOnline: an integrated portal for comparative and functional genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

The transcriptional factors MurR and catabolite activator protein regulate N-acetylmuramic acid catabolism in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Missing genes in metabolic pathways: a comparative genomics approach

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Characterization of the minimal DNA binding domain of the human papillomavirus e1 helicase: fluorescence anisotropy studies and characterization of a dimerization-defective mutant protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Multiple mechanisms controlling carbon metabolism in bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Catabolite repression control in the Pseudomonads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

The catabolite repressor/activator (Cra) protein of enteric bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Domain Organization and a Protease-Sensitive Loop in Eukaryotic Ornithine Decarboxylase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Alternative pathways of carbohydrate utilization in pseudomonads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Molecular characterization of the Escherichia coli K-12 zwf gene encoding glucose 6-phosphate dehydrogenase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

Cloning and nucleotide sequence of the Escherichia coli K-12 ppsA gene, encoding PEP synthase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

A set of activators and repressors control peripheral glucose pathways in Pseudomonas putida to yield a common central intermediate

3 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.267963

Dual regulation of zwf-1 by both 2-keto-3-deoxy-6-phosphogluconate and oxidative stress in Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.267963

Analysis of the zwf-pgl-eda-operon in Pseudomonas putida strains H and KT2440.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.267963

Automated purification of recombinant proteins: combining high-throughput with high yield.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.267963

(13)C-based metabolic flux analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.267963

The SIS domain: a phosphosugar-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.267963

Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3195618

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21849503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M111.267963

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21849503%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

21849503

1 reference