(Q30145570)

14 June 2018

title

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. (English)

1 reference

14 June 2018

congenital Zika virus infection

main subject

Zika virus

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27

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Glenn Oliveira

7

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Karthik Gangavarapu

6

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Refugio Robles-Sikisaka

8

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Nathan D. Grubaugh

2

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Joshua Quick

1

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Jaqueline Goes de Jesus

13

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Luiz Carlos Alcantara

20

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Lia Laura Lewis-Ximenez

12

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Oliver G. Pybus

26

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Trevor Bedford

17

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Nicholas J. Loman

28

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Allison Black

16

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Nathan A. Beutler

10

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Nuno Rodrigues Faria

23

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Marta Giovanetti

Marta Giovanetti

14

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Sarah C. Hill

Sarah C Hill

15

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Matthew Loose

Matthew Loose

24

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Ester Sabino

21

Ester C Sabino

1 reference

14 June 2018

Dennis R. Burton

11

Dennis R Burton

1 reference

14 June 2018

Ingra M. Claro

4

Ingra M Claro

1 reference

14 June 2018

Thomas F Rogers

9

Thomas F Rogers

1 reference

14 June 2018

Steven T. Pullan

3

Steven T Pullan

1 reference

14 June 2018

Miles W Carroll

18

Miles W Carroll

1 reference

14 June 2018

Sally A. Baylis

22

Sally A Baylis

1 reference

14 June 2018

author name string

Andrew D Smith

5

1 reference

14 June 2018

Marcio Nunes

19

1 reference

14 June 2018

Jared T Simpson

25

1 reference

14 June 2018

language of work or name

1 reference

24 May 2017

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14 June 2018

number of pages

16

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based on heuristic

inferred from page(s)

published in

Nature Protocols

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14 June 2018

volume

12

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14 June 2018

page(s)

1261-1276

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14 June 2018

issue

6

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14 June 2018

on focus list of Wikimedia project

WikiProject Zika Corpus

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cites work

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Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases

20 June 2018

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Virus genomes reveal factors that spread and sustained the Ebola epidemic

20 June 2018

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1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America

20 June 2018

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Complete Genome Sequence of Zika Virus Isolated from Semen

20 June 2018

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20 June 2018

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Mobile real-time surveillance of Zika virus in Brazil

20 June 2018

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Genome Sequence of a Candidate World Health Organization Reference Strain of Zika Virus for Nucleic Acid Testing

20 June 2018

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Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method

20 June 2018

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Distinct Zika Virus Lineage in Salvador, Bahia, Brazil

20 June 2018

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Outbreak of Zika Virus Infection, Chiapas State, Mexico, 2015, and First Confirmed Transmission by Aedes aegypti Mosquitoes in the Americas

20 June 2018

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Real-time digital pathogen surveillance - the time is now.

20 June 2018

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Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

20 June 2018

1 reference

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Coming of age: ten years of next-generation sequencing technologies

20 June 2018

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Real-time, portable genome sequencing for Ebola surveillance

20 June 2018

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Isolation of a Novel Insect-Specific Flavivirus from Culiseta melanura in the Northeastern United States

20 June 2018

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Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

20 June 2018

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Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa

20 June 2018

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Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples

20 June 2018

1 reference

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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

20 June 2018

1 reference

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Multiplex degenerate primer design for targeted whole genome amplification of many viral genomes

20 June 2018

1 reference

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Actionable diagnosis of neuroleptospirosis by next-generation sequencing

20 June 2018

1 reference

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Trimmomatic: a flexible trimmer for Illumina sequence data

20 June 2018

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A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

20 June 2018

1 reference

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Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing

20 June 2018

1 reference

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Snakemake--a scalable bioinformatics workflow engine

20 June 2018

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Performance comparison of benchtop high-throughput sequencing platforms

20 June 2018

1 reference

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

20 June 2018

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Skip the alignment: degenerate, multiplex primer and probe design using K-mer matching instead of alignments

20 June 2018

1 reference

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

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Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach

20 June 2018

1 reference

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20 June 2018

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20 June 2018

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20 June 2018

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Unusual distribution of mutations associated with serial bottleneck passages of human immunodeficiency virus type 1

20 June 2018

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Primer3 on the WWW for general users and for biologist programmers

20 June 2018

1 reference

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Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5902022

A guide to the design and use of mismatched and degenerate primers.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5902022

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.

26 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Target-enrichment strategies for next-generation sequencing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Zika virus evolution and spread in the Americas

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Clinical and biological insights from viral genome sequencing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Enrichment by hybridisation of long DNA fragments for Nanopore sequencing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Use of Unamplified RNA/cDNA-Hybrid Nanopore Sequencing for Rapid Detection and Characterization of RNA Viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

5' end cDNA amplification using classic RACE

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

Harmonization of nucleic acid testing for Zika virus: development of the 1st

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.066

31 March 2020

Identifiers

DOI

10.1038/NPROT.2017.066

1 reference

14 June 2018

Dimensions Publication ID

0 references

1 reference

14 June 2018

PubMed ID

28538739

1 reference

14 June 2018