(Q30275290)

7 October 2017

Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold (English)

1 reference

7 October 2017

2

1 reference

7 October 2017

William Raymond Pearson

object named as

William R Pearson

series ordinal

1

0 references

Rodrigo López

series ordinal

3

object named as

Rodrigo Lopez

1 reference

7 October 2017

language of work or name

English

0 references

publication date

6 December 2016

1 reference

7 October 2017

Nucleic Acids Research

1 reference

7 October 2017

45

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7 October 2017

7

1 reference

7 October 2017

e46

1 reference

Creative Commons Attribution 4.0 International

7 October 2017

start time

6 December 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Finding Protein and Nucleotide Similarities with FASTA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Selecting the Right Similarity-Scoring Matrix

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Pfam: the protein families database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Adjusting scoring matrices to correct overextended alignments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

PSI-Search: iterative HOE-reduced profile SSEARCH searching

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Domain enhanced lookup time accelerated BLAST.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Accelerated Profile HMM Searches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

RefProtDom: a protein database with improved domain boundaries and homology relationships

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Homologous over-extension: a challenge for iterative similarity searches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

BLAST+: architecture and applications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

PSI-BLAST pseudocounts and the minimum description length principle.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

SCOOP: a simple method for identification of novel protein superfamily relationships

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Sensitivity and selectivity in protein structure comparison

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

The compositional adjustment of amino acid substitution matrices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Embedding strategies for effective use of information from multiple sequence alignments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

Amino acid substitution matrices from an information theoretic perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5605230

3 June 2018

Identifiers

DOI

10.1093/NAR/GKW1207

1 reference

7 October 2017

1 reference

7 October 2017

PubMed publication ID

27923999

1 reference