(Q30276470)

14 June 2017

Systems level analysis of the Chlamydomonas reinhardtii metabolic network reveals variability in evolutionary co-conservation (English)

1 reference

Chlamydomonas reinhardtii

14 June 2017

1 reference

13

Jason Papin

1 reference

14 June 2017

Ashish Jaiswal

6

0 references

Basel Khraiwesh

Basel Khraiwesh

5

0 references

Kourosh Salehi-Ashtiani

Kourosh Salehi-Ashtiani

16

0 references

Roger Chang

Roger L Chang

12

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David R. Nelson

David R Nelson

9

0 references

author name string

Amphun Chaiboonchoe

1

1 reference

14 June 2017

Lila Ghamsari

2

1 reference

14 June 2017

Bushra Dohai

3

1 reference

14 June 2017

Patrick Ng

4

1 reference

14 June 2017

Kenan Jijakli

7

1 reference

14 June 2017

Joseph Koussa

8

1 reference

14 June 2017

Hong Cai

10

1 reference

14 June 2017

Xinping Yang

11

1 reference

14 June 2017

Haiyuan Yu

14

1 reference

14 June 2017

Santhanam Balaji

15

1 reference

14 June 2017

language of work or name

1 reference

30 June 2016

1 reference

14 June 2017

1 reference

14 June 2017

12

1 reference

14 June 2017

8

1 reference

14 June 2017

2394-2407

1 reference

Evolutionary plasticity and innovations in complex metabolic reaction networks

14 June 2017

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Environmental variability and modularity of bacterial metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Correlation between structure and temperature in prokaryotic metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Evolution of metabolic network organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Chance and necessity in the evolution of minimal metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Three-dimensional structural view of the central metabolic network of Thermotoga maritima

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Chance and necessity: the evolution of morphological complexity and diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Genome-wide expression analysis offers new insights into the origin and evolution of Physcomitrella patens stress response

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

A network perspective on the evolution of metabolism by gene duplication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Evolution of enzymes in metabolism: a network perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

The large-scale organization of metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Global organization of metabolic fluxes in the bacterium Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Evidence for Dsg3 in regulating Src signaling by competing with it for binding to caveolin-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Influence of metabolic network structure and function on enzyme evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Impacts of yeast metabolic network structure on enzyme evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Properties of metabolic networks: structure versus function

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

The NK model of rugged fitness landscapes and its application to maturation of the immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Coevolution to the edge of chaos: Coupled fitness landscapes, poised states, and coevolutionary avalanches

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Empirical fitness landscapes reveal accessible evolutionary paths

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Protein function in the post-genomic era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Genome evolution reveals biochemical networks and functional modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Modular co-evolution of metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Chemical and genomic evolution of enzyme-catalyzed reaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Computational approaches for microalgal biofuel optimization: a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Differential expression in RNA-seq: a matter of depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Design principles of molecular networks revealed by global comparisons and composite motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Molecular phylogeny of choanoflagellates, the sister group to Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Network medicine: a network-based approach to human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Identification of global ferredoxin interaction networks in Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Protein interaction mapping in C. elegans using proteins involved in vulval development

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

A soluble guanylate cyclase mediates negative signaling by ammonium on expression of nitrate reductase in Chlamydomonas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

An automated method for finding molecular complexes in large protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Flux coupling analysis of genome-scale metabolic network reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

21 January 2018

Systems biology of SNPs

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Comparative genomics and bioenergetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Hierarchical modularity and the evolution of genetic interactomes across species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Quantitative genetic interaction mapping using the E-MAP approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Evolutionary dynamics of prokaryotic transcriptional regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Midpoint redox potentials of plant and algal ferredoxins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Plant type ferredoxins and ferredoxin-dependent metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

Microalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6MB00237D

21 January 2018

Identifiers

DOI

10.1039/C6MB00237D

1 reference

14 June 2017

1 reference