(Q30317710)

13 October 2017

A general approach for discriminative de novo motif discovery from high-throughput data (English)

1 reference

13 October 2017

Jens Keilwagen

4

0 references

author name string

Jan Grau

series ordinal

1

1 reference

13 October 2017

Stefan Posch

series ordinal

2

1 reference

13 October 2017

Ivo Grosse

series ordinal

3

1 reference

13 October 2017

language of work or name

English

0 references

publication date

20 September 2013

1 reference

13 October 2017

Nucleic Acids Research

1 reference

13 October 2017

41

1 reference

13 October 2017

21

1 reference

13 October 2017

e197

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

13 October 2017

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Evaluation of methods for modeling transcription factor sequence specificity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

DREME: motif discovery in transcription factor ChIP-seq data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

MEME-ChIP: motif analysis of large DNA datasets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

De-novo discovery of differentially abundant transcription factor binding sites including their positional preference

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Deep and wide digging for binding motifs in ChIP-Seq data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

On the detection and refinement of transcription factor binding sites using ChIP-Seq data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

High-resolution DNA-binding specificity analysis of yeast transcription factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Discriminative motif discovery in DNA and protein sequences using the DEME algorithm

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Genome-wide mapping of in vivo protein-DNA interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

High-resolution profiling of histone methylations in the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Identifying tissue-selective transcription factor binding sites in vertebrate promoters

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Transcriptional regulatory code of a eukaryotic genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Computer methods to locate signals in nucleic acid sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT831

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT831

The TAGteam DNA motif controls the timing of Drosophila pre-blastoderm transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT831

Conformational stability and DNA binding specificity of the cardiac T-box transcription factor Tbx20.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT831

The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT831

A weight array method for splicing signal analysis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834837

A method for identifying splice sites and translational start sites in eukaryotic mRNA

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24057214

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT831

1 reference

13 October 2017

1 reference

13 October 2017

1 reference