(Q30317857)

27 September 2017

Computational predictions provide insights into the biology of TAL effector target sites (English)

1 reference

27 September 2017

computational biology

0 references

4

Ulla Bonas

1 reference

27 September 2017

Jan Grau

1

1 reference

27 September 2017

Annett Wolf

2

1 reference

27 September 2017

Maik Reschke

3

1 reference

27 September 2017

Stefan Posch

5

1 reference

27 September 2017

Jens Boch

6

1 reference

27 September 2017

14 March 2013

1 reference

PLOS Computational Biology

27 September 2017

1 reference

27 September 2017

9

1 reference

27 September 2017

3

1 reference

27 September 2017

e1002962

1 reference

Creative Commons Attribution 4.0 International

27 September 2017

start time

14 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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3 June 2018

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3 June 2018

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Targeted transcriptional activation of silent oct4 pluripotency gene by combining designer TALEs and inhibition of epigenetic modifiers.

3 June 2018

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Structural Basis for Sequence-Specific Recognition of DNA by TAL Effectors

3 June 2018

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The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target

3 June 2018

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The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

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3 June 2018

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TAL effectors: customizable proteins for DNA targeting

3 June 2018

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A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity.

3 June 2018

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Transcriptional activators of human genes with programmable DNA-specificity

3 June 2018

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Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

3 June 2018

1 reference

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Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription

3 June 2018

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A TALE nuclease architecture for efficient genome editing

3 June 2018

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Sugar transporters for intercellular exchange and nutrition of pathogens

3 June 2018

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Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors

3 June 2018

1 reference

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Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

3 June 2018

1 reference

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Role of small RNAs in host-microbe interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Inclusion of neighboring base interdependencies substantially improves genome-wide prokaryotic transcription factor binding site prediction

3 June 2018

1 reference

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Promoter elements of rice susceptibility genes are bound and activated by specific TAL effectors from the bacterial blight pathogen, Xanthomonas oryzae pv. oryzae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis

3 June 2018

1 reference

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TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Galaxy: a web-based genome analysis tool for experimentalists

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

BLAST+: architecture and applications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Breaking the code of DNA binding specificity of TAL-type III effectors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

A simple cipher governs DNA recognition by TAL effectors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Detailed analysis of the DNA recognition motifs of the Xanthomonas type III effectors AvrBs3 and AvrBs3Deltarep16.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Xanthomonas AvrBs3 family-type III effectors: discovery and function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Unique genes in plants: specificities and conserved features throughout evolution

3 June 2018

1 reference

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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

3 June 2018

1 reference

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A bacterial effector acts as a plant transcription factor and induces a cell size regulator

3 June 2018

1 reference

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Plant pathogen recognition mediated by promoter activation of the pepper Bs3 resistance gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

The TIGR Rice Genome Annotation Resource: improvements and new features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Os8N3 is a host disease-susceptibility gene for bacterial blight of rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Galaxy: a platform for interactive large-scale genome analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Characterization of AvrBs3-like effectors from a Brassicaceae pathogen reveals virulence and avirulence activities and a protein with a novel repeat architecture

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Ab initio prediction of transcription factor targets using structural knowledge

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Identification of transcription factor binding sites with variable-order Bayesian networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Methylation as a crucial step in plant microRNA biogenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Summaries of Affymetrix GeneChip probe level data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

A metal-binding member of the late embryogenesis abundant protein family transports iron in the phloem of Ricinus communis L.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Computer methods to locate signals in nucleic acid sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Recognition of AvrBs3-like proteins is mediated by specific binding to promoters of matching pepper Bs3 alleles.

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Splice site identification by idlBNs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Identifying transcription factor binding sites through Markov chain optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Finding short DNA motifs using permuted Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

A hybrid model for robust detection of transcription factor binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

PhyA, a Secreted Protein of Xanthomonas oryzae pv. oryzae, Is Required for Optimum Virulence and Growth on Phytic Acid as a Sole Phosphate Source

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

R gene expression induced by a type-III effector triggers disease resistance in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

The bacterial pathogen Xanthomonas oryzae overcomes rice defenses by regulating host copper redistribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002962

The Xanthomonas citri effector protein PthA interacts with citrus proteins involved in nuclear transport, protein folding and ubiquitination associated with DNA repair

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

A weight array method for splicing signal analysis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597551

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

26 November 2018

1 reference

12 December 2020

Gene-editing nucleases

1 reference

12 December 2020

A method for identifying splice sites and translational start sites in eukaryotic mRNA

1 reference

12 December 2020

Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport

1 reference

12 December 2020

TAL effector RVD specificities and efficiencies

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1002962

Identifiers

DOI

1 reference

journals/ploscb/GrauWRBPB13

27 September 2017

1 reference

DBLP Dataset 2021-01-02

release_dbrzffwtgfez7fszb4dxn22haq

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/dbrzffwtgfez7fszb4dxn22haq

24 November 2022

mapped directly with Wikidata item

1 reference

27 September 2017

1 reference