(Q30342072)

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Regions of minimal structural variation among members of protein domain superfamilies: application to remote homology detection and modelling using distant relationships.

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Europe PubMed Central

PubMed publication ID

20 June 2017

Regions of minimal structural variation among members of protein domain superfamilies: application to remote homology detection and modelling using distant relationships. (English)

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Europe PubMed Central

PubMed publication ID

20 June 2017

author name string

Saikat Chakrabarti

1

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Europe PubMed Central

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20 June 2017

R Sowdhamini

2

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Europe PubMed Central

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20 June 2017

language of work or name

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publication date

1 July 2004

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Europe PubMed Central

PubMed publication ID

20 June 2017

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Europe PubMed Central

PubMed publication ID

20 June 2017

569

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Europe PubMed Central

PubMed publication ID

20 June 2017

1-3

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Europe PubMed Central

PubMed publication ID

20 June 2017

31-36

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Europe PubMed Central

PubMed publication ID

20 June 2017

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

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A study of structural determinants in the interleukin-1 fold

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One thousand families for the molecular biologist

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

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Protein folds in the all-beta and all-alpha classes

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21 January 2018

CATH--a hierarchic classification of protein domain structures

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21 January 2018

CAMPASS: a database of structurally aligned protein superfamilies

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21 January 2018

SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

PASS2: a semi-automated database of protein alignments organised as structural superfamilies.

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

The Protein Data Bank. A computer-based archival file for macromolecular structures

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21 January 2018

The Protein Data Bank

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The evolution of alpha/beta barrel enzymes

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

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Clusters in alpha/beta barrel proteins: implications for protein structure, function, and folding: a graph theoretical approach

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions

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21 January 2018

Anatomy and evolution of proteins displaying the viral capsid jellyroll topology

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

The alpha/beta hydrolase fold

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

Comparison of conformational characteristics in structurally similar protein pairs

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

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21 January 2018

The interpretation of protein structures: Estimation of static accessibility

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21 January 2018

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

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21 January 2018

JOY: protein sequence-structure representation and analysis.

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21 January 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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21 January 2018

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

T-Coffee: A novel method for fast and accurate multiple sequence alignment

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

A comprehensive comparison of multiple sequence alignment programs

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

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Improvement of comparative modeling by the application of conserved motifs amongst distantly related proteins as additional restraints

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Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes.

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21 January 2018

SMoS: a database of structural motifs of protein superfamilies.

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21 January 2018

Protein sequence similarity searches using patterns as seeds

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21 January 2018

Alignment and searching for common protein folds using a data bank of structural templates

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21 January 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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21 January 2018

An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure

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β-Trefoil fold

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Flexible protein sequence patterns

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

1 reference

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21 January 2018

A Structural Basis for Sequence Comparisons

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21 January 2018

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2004.05.028

21 January 2018

Identifiers

10.1016/J.FEBSLET.2004.05.028

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

ResearchGate publication ID

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