(Q30360293)

13 November 2017

Helix kinks are equally prevalent in soluble and membrane proteins. (English)

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13 November 2017

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2

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13 November 2017

3

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13 November 2017

Henry R Wilman

1

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language of work or name

English

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publication date

16 April 2014

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13 November 2017

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13 November 2017

82

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13 November 2017

9

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13 November 2017

1960-1970

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

PDBTM: Protein Data Bank of transmembrane proteins after 8 years

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Update on activities at the Universal Protein Resource (UniProt) in 2013

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Ser/Thr motifs in transmembrane proteins: conservation patterns and effects on local protein structure and dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

HELANAL-Plus: a web server for analysis of helix geometry in protein structures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

The Amyloid Precursor Protein Has a Flexible Transmembrane Domain and Binds Cholesterol

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Shifting hydrogen bonds may produce flexible transmembrane helices.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Membrane protein structural bioinformatics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

String kernels and high-quality data set for improved prediction of kinked helices in α-helical membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Identification of proline residues in or near the transmembrane helices of the human breast cancer resistance protein (BCRP/ABCG2) that are important for transport activity and substrate specificity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

MHC molecules in health and disease: At the cusp of a paradigm shift

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

TMKink: a method to predict transmembrane helix kinks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Improved helix and kink characterization in membrane proteins allows evaluation of kink sequence predictors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Membrane protein folding: how important are hydrogen bonds?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

MeMotif: a database of linear motifs in alpha-helical transmembrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

iMembrane: homology-based membrane-insertion of proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

How TCRs bind MHCs, peptides, and coreceptors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Molecular mechanism of 7TM receptor activation--a global toggle switch model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

OPM: orientations of proteins in membranes database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Transmembrane proteins in the Protein Data Bank: identification and classification.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Ser and Thr residues modulate the conformation of pro-kinked transmembrane alpha-helices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

PISCES: a protein sequence culling server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

MPtopo: A database of membrane protein topology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Hinges, swivels and switches: the role of prolines in signalling via transmembrane alpha-helices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Membrane protein folding and stability: physical principles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

JOY: protein sequence-structure representation and analysis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Weighting in sequence space: a comparison of methods in terms of generalized sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Solvent-induced distortions and the curvature of alpha-helices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Helix geometry in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

A fast and sensitive multiple sequence alignment algorithm.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285789

Structural biology. Membrane protein twists and turns.

3 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Comprehensive analysis of the helix-X-helix motif in soluble proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Proline-induced hinges in transmembrane helices: possible roles in ion channel gating

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Identification of a proline residue as a transduction element involved in voltage gating of gap junctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Kink characterization and modeling in transmembrane protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

HELANAL: a program to characterize helix geometry in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Structural determinants stabilizing helical distortions related to proline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Proline substitutions are not easily accommodated in a membrane protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Proline-induced distortions of transmembrane helices.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Prokink: a protocol for numerical evaluation of helix distortions by proline.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

The Approach of Conformational Chimeras to Model the Role of Proline-Containing Helices on GPCR Mobility: the Fertile Case of Cys-LTR1

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

Coils in the Membrane Core Are Conserved and Functionally Important

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

A Ser residue influences the structure and stability of a Pro-kinked transmembrane helix dimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24550

21 January 2018

Identifiers

DOI

10.1002/PROT.24550

1 reference

13 November 2017

1 reference

PMC publication ID

4285789

13 November 2017

PubMed publication ID

24638929

1 reference

PMC publication ID

4285789