(Q30360321)

English

Exploring pathways and barriers for coupled ET/PT in cytochrome c oxidase: a general framework for examining energetics and mechanistic alternatives.

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scholarly article

1 reference

Europe PubMed Central

12 August 2017

Exploring pathways and barriers for coupled ET/PT in cytochrome c oxidase: a general framework for examining energetics and mechanistic alternatives. (English)

1 reference

Europe PubMed Central

12 August 2017

4

object named as

Arieh Warshel

1 reference

Europe PubMed Central

12 August 2017

author name string

Mats H M Olsson

1

1 reference

Europe PubMed Central

12 August 2017

Per E M Siegbahn

2

1 reference

Europe PubMed Central

12 August 2017

Margareta R A Blomberg

3

1 reference

Europe PubMed Central

12 August 2017

language of work or name

0 references

publication date

30 January 2007

1 reference

Europe PubMed Central

12 August 2017

Biochimica et Biophysica Acta

1 reference

Europe PubMed Central

12 August 2017

1767

1 reference

Europe PubMed Central

12 August 2017

3

1 reference

Europe PubMed Central

12 August 2017

244-260

1 reference

Europe PubMed Central

12 August 2017

Modeling electrostatic effects in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Mapping protein dynamics in catalytic intermediates of the redox-driven proton pump cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Electrostatic environment of hemes in proteins: pK(a)s of hydroxyl ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The barrier for proton transport in aquaporins as a challenge for electrostatic models: the role of protein relaxation in mutational calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Monte Carlo simulations of proton pumps: on the working principles of the biological valve that controls proton pumping in cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Electrostatic control of the efficiency of light-induced electron transfer across membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The timing of proton migration in membrane-reconstituted cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Activationless electron transfer through the hydrophobic core of cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Computer simulation of explicit proton translocation in cytochrome c oxidase: the D-pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Proton transfer dynamics at membrane/water interface and mechanism of biological energy conversion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Studies of proton translocations in biological systems: simulating proton transport in carbonic anhydrase by EVB-based models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Structural elements involved in electron-coupled proton transfer in cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Important roles of tyrosines in photosystem II and cytochrome oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Dynamic water networks in cytochrome C oxidase from Paracoccus denitrificans investigated by molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Dynamics of electron transfer pathways in cytochrome C oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The catalytic cycle of cytochrome c oxidase is not the sum of its two halves.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Redox-coupled proton translocation in biological systems: proton shuttling in cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Redox-driven proton pumping by heme-copper oxidases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Understanding the mechanism of proton movement linked to oxygen reduction in cytochrome c oxidase: lessons from other proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Influence of structure, pH and membrane potential on proton movement in cytochrome oxidase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Proton transport via the membrane surface.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

What are the dielectric "constants" of proteins and how to validate electrostatic models?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The role of the D- and K-pathways of proton transfer in the function of the haem-copper oxidases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Simulating proton translocations in proteins: probing proton transfer pathways in the Rhodobacter sphaeroides reaction center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Density-functional exchange-energy approximation with correct asymptotic behavior

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The proton collecting function of the inner surface of cytochrome c oxidase from Rhodobacter sphaeroides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Dioxygen activation and bond cleavage by mixed-valence cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Cytochrome c oxidase: structure and spectroscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Structure at 2.7 A resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody FV fragment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Internal electron-transfer reactions in cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Control of the redox potential of cytochrome c and microscopic dielectric effects in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Computer Simulations of Electron-Transfer Reactions in Solution and in Photosynthetic Reaction Centers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

The multifarious couplings of energy transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Conversion of light energy to electrostatic energy in the proton pump of Halobacterium halobium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

Proton pump coupled to cytochrome c oxidase in mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

3 June 2018

G204D, a mutation that blocks the proton-conducting D-channel of the aa3-type cytochrome c oxidase from Rhodobacter sphaeroides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

A mechanistic principle for proton pumping by cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Simulating redox coupled proton transfer in cytochrome c oxidase: looking for the proton bottleneck.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Proton pumping mechanism and catalytic cycle of cytochrome c oxidase: Coulomb pump model with kinetic gating

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Density functional theory of biologically relevant metal centers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Proton-coupled electron transfer in a model for tyrosine oxidation in photosystem II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Exploring the origin of the ion selectivity of the KcsA potassium channel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Water-gated mechanism of proton translocation by cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Frozen Density Functional Free Energy Simulations of Redox Proteins: Computational Studies of the Reduction Potential of Plastocyanin and Rusticyanin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Computer simulation of water in cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Determination of proton transfer rates by chemical rescue: application to bacterial reaction centers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

A mutation in subunit I of cytochrome oxidase from Rhodobacter sphaeroides results in an increase in steady-state activity but completely eliminates proton pumping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Pathways for electron tunneling in cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025695

26 November 2018

Tracing the D-pathway in reconstituted site-directed mutants of cytochrome c oxidase from Paracoccus denitrificans

1 reference

https://pubmed.ncbi.nlm.nih.gov/17350588

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation of the "peroxy" intermediate in cytochrome c oxidase is associated with internal proton/hydrogen transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/17350588

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxygen activation and reduction in respiration: involvement of redox-active tyrosine 244

1 reference

https://pubmed.ncbi.nlm.nih.gov/17350588

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Water−Hydroxide Exchange Reactions at the Catalytic Site of Heme−Copper Oxidases

1 reference

https://pubmed.ncbi.nlm.nih.gov/17350588

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heme/Copper Terminal Oxidases

1 reference

https://pubmed.ncbi.nlm.nih.gov/17350588

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxygen and proton pathways in cytochrome c oxidase

1 reference

https://pubmed.ncbi.nlm.nih.gov/17350588

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantum chemistry applied to the mechanisms of transition metal containing enzymes -- cytochrome c oxidase, a particularly challenging case

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2007.01.015

A new mixing of Hartree–Fock and local density‐functional theories

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2007.01.015

Density-functional thermochemistry. III. The role of exact exchange

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2007.01.015

Accurate First Principles Calculation of Molecular Charge Distributions and Solvation Energies from Ab Initio Quantum Mechanics and Continuum Dielectric Theory

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2007.01.015

Identifiers

10.1016/J.BBABIO.2007.01.015

1 reference

Europe PubMed Central

12 August 2017

1 reference

Europe PubMed Central

12 August 2017

1 reference

Europe PubMed Central

12 August 2017

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