(Q30360793)

22 August 2017

Automated procedure for contact-map-based protein structure reconstruction. (English)

1 reference

22 August 2017

1 reference

4

Malgorzata Kotulska

1 reference

22 August 2017

Bogumil M Konopka

1

1 reference

22 August 2017

Marika Ciombor

series ordinal

2

1 reference

22 August 2017

Monika Kurczynska

series ordinal

3

1 reference

22 August 2017

29 March 2014

1 reference

Journal of Membrane Biology

22 August 2017

12

1 reference

based on heuristic

inferred from page(s)

published in

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22 August 2017

247

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22 August 2017

5

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22 August 2017

409-420

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Creative Commons Attribution 4.0 International

22 August 2017

start time

29 March 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1007/s00232-014-9648-x

0 references

cites work

CASP10 results compared to those of previous CASP experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

One contact for every twelve residues allows robust and accurate topology-level protein structure modeling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Assessment of CASP10 contact-assisted predictions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Optimization of 3D Poisson-Nernst-Planck model for fast evaluation of diverse protein channels

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Memoir: template-based structure prediction for membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

PDBTM: Protein Data Bank of transmembrane proteins after 8 years

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Template-based protein structure modeling using the RaptorX web server.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Three-dimensional structures of membrane proteins from genomic sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Protein 3D structure computed from evolutionary sequence variation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Protein topology from predicted residue contacts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Evaluation of residue-residue contact predictions in CASP9

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Optimal contact definition for reconstruction of contact maps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Defining an essence of structure determining residue contacts in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Improved prediction of protein side-chain conformations with SCWRL4

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Protein structure prediction on the Web: a case study using the Phyre server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

PConPy--a Python module for generating 2D protein maps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

OPM: orientations of proteins in membranes database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

The HHpred interactive server for protein homology detection and structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Improved greedy algorithm for protein structure reconstruction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

A hidden markov model derived structural alphabet for proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Electrostatics of nanosystems: application to microtubules and the ribosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Recovery of protein structure from contact maps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983884

Ion flux through membrane channels--an enhanced algorithm for the Poisson-Nernst-Planck model

3 June 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00232-014-9648-X

The combinatorial distance geometry method for the calculation of molecular conformation. I. A new approach to an old problem.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00232-014-9648-X

Modeling the mechanism of metabolic oscillations in ischemic cardiac myocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00232-014-9648-X

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00232-014-9648-X

10.1007/S00232-014-9648-X

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

22 August 2017

0 references

1 reference

22 August 2017

PubMed publication ID

24682239

1 reference