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Protein structure prediction by pro-Sp3-TASSER.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
title
Protein structure prediction by pro-Sp3-TASSER.
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
main subject
protein structure prediction
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author
Jeffrey Skolnick
series ordinal
2
object named as
Jeffrey Skolnick
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
author name string
Hongyi Zhou
series ordinal
1
1 reference
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Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
language of work or name
English
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publication date
1 March 2009
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stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
number of pages
9
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based on heuristic
inferred from page(s)
published in
Biophysical Journal
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
volume
96
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
page(s)
2119-2127
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
issue
6
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
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20 June 2018
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20 June 2018
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20 June 2018
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Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: assessment in two blind tests.
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20 June 2018
The protein structure prediction problem could be solved using the current PDB library
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20 June 2018
Protein homology detection by HMM-HMM comparison
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20 June 2018
Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
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20 June 2018
Scoring function for automated assessment of protein structure template quality
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PubMed Central
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20 June 2018
Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm
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20 June 2018
Automated structure prediction of weakly homologous proteins on a genomic scale
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20 June 2018
Alignment of protein sequences by their profiles
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20 June 2018
SPICKER: a clustering approach to identify near-native protein folds
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20 June 2018
TOUCHSTONE II: a new approach to ab initio protein structure prediction
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20 June 2018
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20 June 2018
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20 June 2018
3D-Jury: a simple approach to improve protein structure predictions
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20 June 2018
Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.
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20 June 2018
Reliability of assessment of protein structure prediction methods.
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20 June 2018
Combining multiple structure and sequence alignments to improve sequence detection and alignment: application to the SH2 domains of Janus kinases
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20 June 2018
Protein structure prediction and structural genomics
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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20 June 2018
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
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20 June 2018
Prospects for ab initio protein structural genomics.
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20 June 2018
Recent improvements in prediction of protein structure by global optimization of a potential energy function.
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20 June 2018
Improving the quality of twilight-zone alignments
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20 June 2018
Enhanced genome annotation using structural profiles in the program 3D-PSSM
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20 June 2018
Comparison of sequence profiles. Strategies for structural predictions using sequence information
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20 June 2018
Structural genomics and its importance for gene function analysis.
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20 June 2018
Protein secondary structure prediction based on position-specific scoring matrices
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20 June 2018
GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences
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20 June 2018
Hidden Markov models for detecting remote protein homologies
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20 June 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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20 June 2018
Protein fold recognition using sequence-derived predictions
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20 June 2018
Sequence alignment and penalty choice. Review of concepts, case studies and implications
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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20 June 2018
Profile analysis: detection of distantly related proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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20 June 2018
Parametric sequence comparisons
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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20 June 2018
A new approach to protein fold recognition
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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20 June 2018
The Protein Data Bank: a computer-based archival file for macromolecular structures
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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20 June 2018
Fold recognition by concurrent use of solvent accessibility and residue depth
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
SPARKS 2 and SP3 servers in CASP6.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
TASSER: an automated method for the prediction of protein tertiary structures in CASP6.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
Enriching the sequence substitution matrix by structural information.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
retrieved
26 November 2018
The PDB is a covering set of small protein structures.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
Hybrid fold recognition: combining sequence derived properties with evolutionary information.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717286
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26 November 2018
3D‐SHOTGUN: A novel, cooperative, fold‐recognition meta‐predictor
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19289038
retrieved
12 December 2020
based on heuristic
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Identifiers
DOI
10.1016/J.BPJ.2008.12.3898
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
PMCID
2717286
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
PubMed ID
19289038
1 reference
stated in
Europe PubMed Central
PMCID
2717286
retrieved
19 August 2017
ResearchGate publication ID
24203443
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