(Q30375959)

English

Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning.

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning. (English)

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

1 reference

based on heuristic

inferred from title

protein structure prediction

0 references

5

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

8

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

9

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

author name string

Rhys Heffernan

1

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Kuldip Paliwal

2

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

James Lyons

3

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Abdollah Dehzangi

4

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Jihua Wang

6

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Abdul Sattar

7

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

language of work or name

0 references

publication date

22 June 2015

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Scientific Reports

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Europe PubMed Central

PMC publication ID

17 October 2017

5

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

11476

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

copyright license

Creative Commons Attribution 4.0 International

22 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

i3Drefine software for protein 3D structure refinement and its assessment in CASP10

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Protein threading using context-specific alignment potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

DNdisorder: predicting protein disorder using boosting and deep networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Deep architectures for protein contact map prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

A unified multitask architecture for predicting local protein properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Template-based protein structure modeling using TASSER(VMT.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Trends in template/fragment-free protein structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

I-TASSER: a unified platform for automated protein structure and function prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Alternating evolutionary pressure in a genetic algorithm facilitates protein model selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Real-value prediction of backbone torsion angles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Learning multiple layers of representation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

High accuracy template based modeling by global optimization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: combining GOR V and Fragment Database Mining (FDM)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

MUPRED: a tool for bridging the gap between template based methods and sequence profile based methods for protein secondary structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

PISCES: recent improvements to a PDB sequence culling server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

FFAS03: a server for profile--profile sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Combining prediction of secondary structure and solvent accessibility in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Combining evolutionary and structural information for local protein structure prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Accurate prediction of solvent accessibility using neural networks-based regression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Protein structure prediction using Rosetta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Protein backbone angle prediction with machine learning approaches.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Prediction of coordination number and relative solvent accessibility in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Review: protein secondary structure prediction continues to rise.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Protein secondary structure prediction based on position-specific scoring matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Conservation and prediction of solvent accessibility in protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Minimization of polypeptide energy. I. Preliminary structures of bovine pancreatic ribonuclease S-peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Predicting surface exposure of amino acids from protein sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

20 June 2018

Context-based features enhance protein secondary structure prediction accuracy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

26 November 2018

Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

26 November 2018

Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

26 November 2018

HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

26 November 2018

Prediction of protein accessible surface areas by support vector regression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

26 November 2018

Real value prediction of solvent accessibility from amino acid sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4476419

26 November 2018

Protein secondary structure prediction with dihedral angles

1 reference

https://pubmed.ncbi.nlm.nih.gov/26098304

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation and use of protein backbone angle probabilities

1 reference

https://pubmed.ncbi.nlm.nih.gov/26098304

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/SREP11476

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

ResearchGate publication ID

0 references

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