(Q30387414)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

title

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

101

1 reference

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3 April 2020

Marc F. Lensink

1

1 reference

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3 April 2020

Sameer Velankar

2

1 reference

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3 April 2020

Andriy Kryshtafovych

3

1 reference

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3 April 2020

Joan Segura

7

1 reference

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3 April 2020

Narcis Fernandez-Fuentes

8

1 reference

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3 April 2020

Emilie Neveu

13

1 reference

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3 April 2020

David W. Ritchie

22

1 reference

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3 April 2020

Marie-Dominique Devignes

24

1 reference

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3 April 2020

Mieczyslaw Torchala

26

1 reference

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3 April 2020

Paul A. Bates

28

1 reference

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3 April 2020

Brian G Pierce

34

1 reference

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3 April 2020

Raphaël Guérois

38

1 reference

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3 April 2020

Anna Vangone

39

1 reference

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3 April 2020

João Pglm Rodrigues

40

1 reference

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3 April 2020

Panagiotis L. Kastritis

47

1 reference

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3 April 2020

Alexandre Bonvin

48

1 reference

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3 April 2020

Xianjin Xu

49

1 reference

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3 April 2020

Yang Shen

56

1 reference

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3 April 2020

Yang Shen

57

1 reference

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3 April 2020

Neil J Bruce

65

1 reference

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3 April 2020

Rebecca C Wade

67

1 reference

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3 April 2020

Kenichiro Imai

71

1 reference

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3 April 2020

Kentaro Tomii

75

1 reference

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3 April 2020

Miguel Romero-Durana

77

1 reference

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3 April 2020

Brian Jimenez

78

1 reference

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3 April 2020

Iain H Moal

79

1 reference

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3 April 2020

Dima Kozakov

85

1 reference

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3 April 2020

Daisuke Kuroda

96

1 reference

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3 April 2020

Shourya S Roy Burman

97

1 reference

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3 April 2020

Jeffrey J. Gray

98

1 reference

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3 April 2020

Luigi Cavallo

100

1 reference

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3 April 2020

Shoshana Wodak

103

1 reference

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3 April 2020

Dina Schneidman-Duhovny

5

object named as

Dina Schneidman-Duhovny

1 reference

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3 April 2020

15

Minkyung Baek

1 reference

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3 April 2020

19

Chaok Seok

1 reference

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3 April 2020

17

Lim Heo

1 reference

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3 April 2020

18

Gyu Rie Lee

1 reference

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3 April 2020

14

Hasup Lee

1 reference

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3 April 2020

Adrien S.J. Melquiond

45

object named as

Adrien S J Melquiond

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

46

Koen Visscher

1 reference

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3 April 2020

33

Thom Vreven

1 reference

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3 April 2020

44

Ezgi Karaca

1 reference

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3 April 2020

author name string

Shen-You Huang

4

1 reference

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3 April 2020

Shruthi Viswanath

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Ron Elber

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Sergei Grudinin

11

1 reference

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3 April 2020

Petr Popov

12

1 reference

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3 April 2020

Sangwoo Park

16

1 reference

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3 April 2020

Sanbo Qin

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Huan-Xiang Zhou

21

1 reference

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3 April 2020

Bernard Maigret

23

1 reference

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3 April 2020

Anisah Ghoorah

25

1 reference

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3 April 2020

Raphaël A G Chaleil

27

1 reference

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3 April 2020

Efrat Ben-Zeev

29

1 reference

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3 April 2020

Surendra S Negi

31

1 reference

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3 April 2020

Zhiping Weng

32

1 reference

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3 April 2020

Tyler M Borrman

35

1 reference

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3 April 2020

Françoise Ochsenbein

37

1 reference

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3 April 2020

Gydo van Zundert

41

1 reference

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3 April 2020

Mehdi Nellen

42

1 reference

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3 April 2020

Li Xue

43

1 reference

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3 April 2020

Liming Qiu

50

1 reference

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3 April 2020

Chengfei Yan

51

1 reference

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3 April 2020

Jilong Li

52

1 reference

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3 April 2020

Zhiwei Ma

53

1 reference

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3 April 2020

Jianlin Cheng

54

1 reference

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3 April 2020

Xiaoqin Zou

55

1 reference

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3 April 2020

Lenna X Peterson

58

1 reference

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3 April 2020

Hyung-Rae Kim

59

1 reference

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3 April 2020

Amit Roy

60

1 reference

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3 April 2020

Xusi Han

61

1 reference

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3 April 2020

Juan Esquivel-Rodriguez

62

1 reference

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3 April 2020

Xiaofeng Yu

64

1 reference

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3 April 2020

Jonathan C Fuller

66

1 reference

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3 April 2020

Ivan Anishchenko

68

1 reference

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3 April 2020

Petras J Kundrotas

69

1 reference

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3 April 2020

Ilya A Vakser

70

1 reference

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3 April 2020

Kazunori Yamada

72

1 reference

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3 April 2020

Toshiyuki Oda

73

1 reference

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3 April 2020

Tsukasa Nakamura

74

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Chiara Pallara

76

1 reference

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3 April 2020

Juan Férnandez-Recio

80

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Jong Young Joung

81

1 reference

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3 April 2020

Jong Yun Kim

82

1 reference

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3 April 2020

Keehyoung Joo

83

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Jooyoung Lee

84

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Sandor Vajda

86

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Scott Mottarella

87

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

David R Hall

88

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Dmitri Beglov

89

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Artem Mamonov

90

1 reference

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3 April 2020

Bing Xia

91

1 reference

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3 April 2020

Tanggis Bohnuud

92

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Carlos A Del Carpio

93

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Eichiro Ichiishi

94

1 reference

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3 April 2020

Nicholas Marze

95

1 reference

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3 April 2020

Edrisse Chermak

99

1 reference

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3 April 2020

Andrey Tovchigrechko

102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Andrej Sali

6

1 reference

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3 April 2020

Miriam Eisenstein

30

1 reference

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3 April 2020

Jinchao Yu

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

Daisuke Kihara

63

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

language of work or name

English

0 references

publication date

1 June 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

volume

84 Suppl 1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

page(s)

323-348

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

3 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Template-based structure modeling of protein-protein interactions

20 June 2018

1 reference

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Protein structure modeling with MODELLER.

20 June 2018

1 reference

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ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Blind prediction of interfacial water positions in CAPRI

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Docking, scoring, and affinity prediction in CAPRI.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

High-resolution comparative modeling with RosettaCM.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Intertwined associations in structures of homooligomeric proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Biochemistry. Integrative structural biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Computational design of novel protein binders and experimental affinity maturation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Trendspotting in the Protein Data Bank

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Protein structure prediction from sequence variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Template-based protein structure modeling using the RaptorX web server.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Templates are available to model nearly all complexes of structurally characterized proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

HexServer: an FFT-based protein docking server powered by graphics processors.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

The HADDOCK web server for data-driven biomolecular docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Proteome organization in a genome-reduced bacterium

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Evaluation of template-based models in CASP8 with standard measures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Fast and accurate automatic structure prediction with HHpred.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

MM-align: a quick algorithm for aligning multiple-chain protein complex structures using iterative dynamic programming

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Convergence and combination of methods in protein-protein docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

The RosettaDock server for local protein-protein docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Recent Progress and Future Directions in Protein-Protein Docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Docking and scoring protein complexes: CAPRI 3rd Edition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Inference of macromolecular assemblies from crystalline state

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

TM-align: a protein structure alignment algorithm based on the TM-score

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Protein homology detection by HMM-HMM comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

LGA: A method for finding 3D similarities in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Structural basis of macromolecular recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Processing and evaluation of predictions in CASP4

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Structural symmetry and protein function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5030136

The cell as a collection of protein machines: preparing the next generation of molecular biologists

20 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25007

Docking and scoring protein interactions: CAPRI 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25007

M-ZDOCK: a grid-based approach for Cn symmetric multimer docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25007

Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25007

A dissection of specific and non-specific protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25007

Blind predictions of protein interfaces by docking calculations in CAPRI

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25007

The subunit interfaces of weakly associated homodimeric proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27122118

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural biology. Beyond blob-ology

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27122118

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.25007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27122118%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

PubMed publication ID

27122118

1 reference