(Q30408519)

17 August 2017

Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction (English)

1 reference

protein structure prediction

17 August 2017

0 references

author

Anastassis Perrakis

22

1 reference

17 August 2017

Jasmine Young

29

0 references

Sergio Galán Bartual

Sergio G Bartual

3

0 references

Evangelos Christodoulou

Evangelos Christodoulou

7

0 references

John Moult

John Moult

2

0 references

Torsten Schwede

Torsten Schwede

30

0 references

Mark J van Raaij

Mark J van Raaij

24

0 references

Liang Tong

Liang Tong

27

0 references

Gaetano T. Montelione

20

Gaetano T Montelione

1 reference

17 August 2017

5

Helen Berman

1 reference

17 August 2017

J Fernando Bazan

4

1 reference

17 August 2017

Darren E Casteel

6

1 reference

17 August 2017

John K Everett

8

1 reference

17 August 2017

Jens Hausmann

9

1 reference

17 August 2017

Tatjana Heidebrecht

10

1 reference

17 August 2017

Tanya Hills

11

1 reference

17 August 2017

Raymond Hui

12

1 reference

17 August 2017

John F Hunt

13

1 reference

17 August 2017

Jayaraman Seetharaman

14

1 reference

17 August 2017

Michael A Kennedy

16

1 reference

17 August 2017

Choel Kim

17

1 reference

17 August 2017

Andreas Lingel

18

1 reference

17 August 2017

Karolina Michalska

19

1 reference

17 August 2017

José M Otero

21

1 reference

17 August 2017

Juan C Pizarro

23

1 reference

17 August 2017

Theresa A Ramelot

25

1 reference

17 August 2017

Francois Rousseau

26

1 reference

17 August 2017

Amy K Wernimont

28

1 reference

17 August 2017

language of work or name

English

0 references

publication date

21 October 2011

1 reference

17 August 2017

1 reference

17 August 2017

79 Suppl 10

1 reference

17 August 2017

6-20

1 reference

Assessment of template based protein structure predictions in CASP9.

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

CASP9 target classification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Assessment of ligand-binding residue predictions in CASP9.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Structure of 2-oxo-3-deoxygalactonate kinase fromKlebsiella pneumoniae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Structural basis of substrate discrimination and integrin binding by autotaxin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Crystal structure of autotaxin and insight into GPCR activation by lipid mediators

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Morphogenesis of the T4 tail and tail fibers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Structure of the bacteriophage T4 long tail fiber receptor-binding tip

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

A Crystal Structure of the Cyclic GMP-dependent Protein Kinase Iβ Dimerization/Docking Domain Reveals Molecular Details of Isoform-specific Anchoring*

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

cGMP-dependent protein kinases and cGMP phosphodiesterases in nitric oxide and cGMP action

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Dali server: conservation mapping in 3D

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Boronic acid-based inhibitor of autotaxin reveals rapid turnover of LPA in the circulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

CyanoBase: the cyanobacteria genome database update 2010.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

PSI-2: structural genomics to cover protein domain family space.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Lysophosphatidic acid (LPA) and its receptors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Base J: Discovery, Biosynthesis, and Possible Functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Structural specificity in coiled-coil interactions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Pharmacological interference with protein-protein interactions mediated by coiled-coil motifs.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

High blood pressure arising from a defect in vascular function.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Progress over the first decade of CASP experiments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Identification of the interface between cGMP-dependent protein kinase Ibeta and its interaction partners TFII-I and IRAG reveals a common interaction motif

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

NPP-type ectophosphodiesterases: unity in diversity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Characterization, structure and function of linker polypeptides in phycobilisomes of cyanobacteria and red algae: an overview

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The many faces of the helix-turn-helix domain: transcription regulation and beyond

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Inhibition of autotaxin by lysophosphatidic acid and sphingosine 1-phosphate

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Reconstitution of phycobilisome core-membrane linker, LCM, by autocatalytic chromophore binding to ApcE.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The bacteriophage T4 DNA injection machine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Coiled coil domains: stability, specificity, and biological implications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The metabolism of D-galactose in Pseudomonas saccharophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The structure of the receptor-binding domain of the bacteriophage T4 short tail fibre reveals a knitted trimeric metal-binding fold

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Coiled-coils: stability, specificity, and drug delivery potential

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Identification of human plasma lysophospholipase D, a lysophosphatidic acid-producing enzyme, as autotaxin, a multifunctional phosphodiesterase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Autotaxin has lysophospholipase D activity leading to tumor cell growth and motility by lysophosphatidic acid production

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The Pfam protein families database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

PDZ domains and the organization of supramolecular complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Urkinase: Structure of Acetate Kinase, a Member of the ASKHA Superfamily of Phosphotransferases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Structure of bacteriophage T4 gene product 11, the interface between the baseplate and short tail fibers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

The PSIPRED protein structure prediction server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

PAR, a novel androgen regulated gene, ubiquitously expressed in normal and malignant cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

JTB: a novel membrane protein gene at 1q21 rearranged in a jumping translocation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Tailed bacteriophages: the order caudovirales

20 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

20 June 2018

https://api.crossref.org/works/10.1002%2FPROT.23196

Solution structure of midkine, a new heparin-binding growth factor

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Stoichiometry and domainal organization of the long tail-fiber of bacteriophage T4: a hinged viral adhesin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

beta-D-glucosyl-hydroxymethyluracil: a novel modified base present in the DNA of the parasitic protozoan T. brucei

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Two-chaperone assisted soluble expression and purification of the bacteriophage T4 long tail fibre protein gp37.

20 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23196

Evolution of bacteriophage tails: Structure of T4 gene product 10.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23196

Dimerization of cGMP-dependent protein kinase Ibeta is mediated by an extensive amino-terminal leucine zipper motif, and dimerization modulates enzyme function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23196

Peptide 'Velcro': design of a heterodimeric coiled coil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23196

Structural basis for recruitment of the ATPase activator Aha1 to the Hsp90 chaperone machinery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23196

CASP9 results compared to those of previous CASP experiments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692002

Asymmetric Activation of the Hsp90 Dimer by Its Cochaperone Aha1

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22020785

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Retraction: Open and closed conformations reveal induced fit movements in butyrate kinase 2 activation. J. Diao, Y. D. Ma, and M. S. Hasson

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22020785

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.23196

1 reference

17 August 2017

1 reference

17 August 2017

PubMed publication ID

22020785

1 reference