(Q30419327)

14 September 2017

Recursive protein modeling: a divide and conquer strategy for Protein Structure Prediction and its case study in CASP9 (English)

1 reference

protein structure prediction

14 September 2017

0 references

2

Jesse Eickholt

1 reference

14 September 2017

Jianlin Cheng

1

1 reference

14 September 2017

Zheng Wang

series ordinal

3

1 reference

14 September 2017

Xin Deng

series ordinal

4

1 reference

14 September 2017

1 June 2012

1 reference

Journal of Bioinformatics and Computational Biology

14 September 2017

1 reference

14 September 2017

10

1 reference

14 September 2017

3

1 reference

14 September 2017

1242003

1 reference

Critical assessment of methods of protein structure prediction (CASP)--round IX

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

CASP9 target classification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

A conformation ensemble approach to protein residue-residue contact

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

APOLLO: a quality assessment service for single and multiple protein models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Protein loop modeling by using fragment assembly and analytical loop closure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

I-TASSER: a unified platform for automated protein structure and function prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

A self-organizing algorithm for modeling protein loops.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Target domain definition and classification in CASP8

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Prediction of global and local quality of CASP8 models by MULTICOM series.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Evaluating the absolute quality of a single protein model using structural features and support vector machines.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

A multi-template combination algorithm for protein comparative modeling.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Structural genomics: from genes to structures with valuable materials and many questions in between.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

QMEAN: A comprehensive scoring function for model quality assessment.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

The HHpred interactive server for protein homology detection and structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Protein homology detection by HMM-HMM comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Automated structure prediction of weakly homologous proteins on a genomic scale

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Modeller: generation and refinement of homology-based protein structure models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

LGA: A method for finding 3D similarities in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

A comparison of profile hidden Markov model procedures for remote homology detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Pcons: a neural-network-based consensus predictor that improves fold recognition.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Protein structure prediction and structural genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Hidden Markov models for detecting remote protein homologies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Profile hidden Markov models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Dominant forces in protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622867

Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles.

20 June 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720012420036

A kinematic view of loop closure

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720012420036

Prediction of global and local model quality in CASP8 using the ModFOLD server.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720012420036

Improving sequence-based fold recognition by using 3D model quality assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720012420036

Assembling novel protein folds from super-secondary structural fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720012420036

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22809379

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

First-principles calculation of the folding free energy of a three-helix bundle protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22809379

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22809379

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1142/S0219720012420036

1 reference

14 September 2017

journals/jbcb/ChengEWD12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 September 2017

PubMed publication ID

22809379

1 reference