(Q30427014)

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Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

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scholarly article

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Europe PubMed Central

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11 August 2017

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control (English)

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11 August 2017

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comparative genomics

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based on heuristic

inferred from title

2

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21 June 2017

Yves Van de Peer

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21 June 2017

Vinita S Joardar

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Vinita S Joardar

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Martin Wu

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David S Roos

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Michael W. Mather

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Michael W Mather

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Robert S Coyne

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11 August 2017

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Dhanasekaran Shanmugam

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Jessica B Hostetler

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Daniel Brami

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Justin Johnson

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Diana Radune

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Irtisha Singh

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Jonathan H Badger

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Ujjwal Kumar

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Milton Saier

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Yufeng Wang

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Hong Cai

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Jianying Gu

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Akhil B Vaidya

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David E Wilkes

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Vidyalakshmi Rajagopalan

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David J Asai

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Chad G Pearson

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Robert C Findly

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Harry W Dickerson

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Cindy Martens

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Donna M Cassidy-Hanley

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Theodore G Clark

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17 October 2011

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10

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11 August 2017

R100

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11 August 2017

https://scigraph.springernature.com/pub.10.1186/gb-2011-12-10-r100

0 references

Transcriptional profiling of stage specific gene expression in the parasitic ciliate Ichthyophthirius multifiliis

1 reference

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Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family

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Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses

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Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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The global cysteine peptidase landscape in parasites

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Endosymbiotic bacteria in the parasitic ciliate Ichthyophthirius multifiliis

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Mitochondrial evolution and functions in malaria parasites.

1 reference

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Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes

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Calcium-dependent signaling and kinases in apicomplexan parasites

1 reference

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TopHat: discovering splice junctions with RNA-Seq

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Palindromic gene amplification--an evolutionarily conserved role for DNA inverted repeats in the genome

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Improved prediction of malaria degradomes by supervised learning with SVM and profile kernel

1 reference

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ATP synthase and the actions of inhibitors utilized to study its roles in human health, disease, and other scientific areas

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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure

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The Transporter Classification Database: recent advances

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20 June 2018

Dynein-2 affects the regulation of ciliary length but is not required for ciliogenesis in Tetrahymena thermophila

1 reference

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Three members of the LC8/DYNLL family are required for outer arm dynein motor function

1 reference

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20 June 2018

Calcium regulation and signaling in apicomplexan parasites.

1 reference

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Malarial proteases and host cell egress: an 'emerging' cascade

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Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

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Scaffolding and validation of bacterial genome assemblies using optical restriction maps

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Twenty-five dyneins in Tetrahymena: A re-examination of the multidynein hypothesis.

1 reference

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The V-ATPase in Paramecium: functional specialization by multiple gene isoforms

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

1 reference

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Complete mitochondrial genome sequence of three Tetrahymena species reveals mutation hot spots and accelerated nonsynonymous substitutions in Ymf genes

1 reference

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Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

1 reference

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A core complex of BBS proteins cooperates with the GTPase Rab8 to promote ciliary membrane biogenesis

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MEGAN analysis of metagenomic data

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20 June 2018

Differential expression of cysteine proteases in developmental stages of the parasitic ciliate Ichthyophthirius multifiliis

1 reference

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

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20 June 2018

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

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20 June 2018

Complete DNA sequences of the mitochondrial genomes of the pathogenic yeasts Candida orthopsilosis and Candida metapsilosis: insight into the evolution of linear DNA genomes from mitochondrial telomere mutants

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Ichthyophthirius multifiliis Fouquet and Ichthyophthiriosis in Freshwater Teleosts

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Whole-genome shotgun optical mapping of Rhodospirillum rubrum

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The Genome of the African Trypanosome Trypanosoma brucei

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The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

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Of rings and levers: the dynein motor comes of age.

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Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote

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AUGUSTUS: a web server for gene finding in eukaryotes

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GeneWise and Genomewise

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The Bardet-Biedl protein BBS4 targets cargo to the pericentriolar region and is required for microtubule anchoring and cell cycle progression

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The dynein heavy chain family

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Design and regulation of the AAA+ microtubule motor dynein

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The origins of genome complexity

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Tracing pathways of transport protein evolution

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Genome sequence of the human malaria parasite Plasmodium falciparum

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Genome remodeling in ciliated protozoa.

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20 June 2018

Variation in primary sequence and tandem repeat copy number among i-antigens of Ichthyophthirius multifiliis.

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20 June 2018

Parallel evolution of histophagy in ciliates of the genus Tetrahymena

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20 June 2018

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20 June 2018

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20 June 2018

Calcium in ciliated protozoa: sources, regulation, and calcium-regulated cell functions

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20 June 2018

Molecular mechanisms of microtubular organelle assembly in Tetrahymena

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20 June 2018

A whole-genome assembly of Drosophila

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20 June 2018

Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA.

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20 June 2018

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20 June 2018

Multiple enzymatic activities of the murein hydrolase from staphylococcal phage phi11. Identification of a D-alanyl-glycine endopeptidase activity

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20 June 2018

Linear mitochondrial genomes: 30 years down the line

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20 June 2018

Major facilitator superfamily

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20 June 2018

A tool for analyzing and annotating genomic sequences

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20 June 2018

A dynein motor superfamily

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20 June 2018

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

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20 June 2018

Multi-dynein hypothesis

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20 June 2018

An intramolecular recombination mechanism for the formation of the rRNA gene palindrome of Tetrahymena thermophila

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Centrin, centrosomes, and mitotic spindle poles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Gene amplification in Tetrahymena thermophila: formation of extrachromosomal palindromic genes coding for rRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

An unusual genetic code in nuclear genes of Tetrahymena

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Mitochondrial telomeres: surprising diversity of repeated telomeric DNA sequences among six species of Tetrahymena

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Membrane control of ciliary movement in ciliates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Phylogenetic relationships and altered genome structures among Tetrahymena mitochondrial DNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

20 June 2018

Ichthyophthirius multifiliis: a model of cutaneous infection and immunity in fishes.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

Surface coat remodeling during differentiation of Trypanosoma brucei

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

Expression and Function of the Trypanosoma brucei Major Surface Protease (GP63) Genes

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

Dynein light chain family in Tetrahymena thermophila

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

Protozoan genomics for drug discovery.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

Aggressive assembly of pyrosequencing reads with mates

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-10-R100

21 January 2018

A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

26 November 2018

Differential transcription of multiple forms of alpha-2-macroglobulin in carp (Cyprinus carpio) infected with parasites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341644

26 November 2018

Surface display of a parasite antigen in the ciliate Tetrahymena thermophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/22004680

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunisation of channel catfish, Ictalurus punctatus, with Ichthyophthirius multifiliis immobilisation antigens elicits serotype-specific protection

1 reference

https://pubmed.ncbi.nlm.nih.gov/22004680

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immune response of channel catfish to ciliary antigens of Ichthyophthirius multifiliis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22004680

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequencing the Oxytricha trifallax macronuclear genome: a pilot project

1 reference

https://pubmed.ncbi.nlm.nih.gov/22004680

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2011-12-10-R100

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

0 references

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