(Q30431283)

3 November 2017

Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes (English)

1 reference

3 November 2017

8

0 references

Aziz El Hage

6

0 references

Sarah L. French

1

object named as

Sarah L French

1 reference

3 November 2017

Martha L Sikes

2

1 reference

3 November 2017

Robert D Hontz

3

1 reference

3 November 2017

Yvonne N Osheim

4

1 reference

3 November 2017

Tashima E Lambert

5

1 reference

3 November 2017

Mitchell M Smith

7

1 reference

3 November 2017

Jeffrey S Smith

9

1 reference

3 November 2017

Ann L Beyer

10

1 reference

3 November 2017

language of work or name

English

0 references

publication date

22 November 2010

1 reference

Molecular and Cellular Biology

3 November 2017

1 reference

3 November 2017

31

1 reference

3 November 2017

3

1 reference

3 November 2017

482-494

1 reference

describes a project that uses

3 November 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3028620/fullTextXML

inferred from PubMed Central ID database lookup

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3028620/fullTextXML

inferred from PubMed Central ID database lookup

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Yeast pre-rRNA processing and modification occur cotranscriptionally

20 June 2018

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20 June 2018

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The RNA polymerase I transcription machinery: an emerging target for the treatment of cancer

20 June 2018

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20 June 2018

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20 June 2018

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In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

20 June 2018

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20 June 2018

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20 June 2018

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The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance

20 June 2018

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Electron microscope visualization of RNA transcription and processing in Saccharomyces cerevisiae by Miller chromatin spreading

20 June 2018

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Transcription of multiple yeast ribosomal DNA genes requires targeting of UAF to the promoter by Uaf30.

20 June 2018

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DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

20 June 2018

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Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules.

20 June 2018

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Two RNA polymerase I subunits control the binding and release of Rrn3 during transcription

20 June 2018

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Regulation of rRNA synthesis by TATA-binding protein-associated factor Mot1.

20 June 2018

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A common topology for bacterial and eukaryotic transcription initiation?

20 June 2018

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Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA.

20 June 2018

1 reference

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Single-molecule analysis of RNA polymerase transcription

20 June 2018

1 reference

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Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology

20 June 2018

1 reference

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Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae

20 June 2018

1 reference

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The dynamic response of upstream DNA to transcription-generated torsional stress

20 June 2018

1 reference

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DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: effects of DNA bends

20 June 2018

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Global analysis of protein localization in budding yeast

20 June 2018

1 reference

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Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

20 June 2018

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Transcription through the roadblocks: the role of RNA polymerase cooperation

20 June 2018

1 reference

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In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes

20 June 2018

1 reference

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Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins

20 June 2018

1 reference

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Cellular roles of dna topoisomerases: a molecular perspective

20 June 2018

1 reference

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The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: implications for roles of RNases H in DNA replication and repair

20 June 2018

1 reference

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Saccharomyces cerevisiae transcription elongation mutants are defective in PUR5 induction in response to nucleotide depletion

20 June 2018

1 reference

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In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment

20 June 2018

1 reference

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Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA

20 June 2018

1 reference

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The economics of ribosome biosynthesis in yeast

20 June 2018

1 reference

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Replication Protein A (RPA): The Eukaryotic SSB

20 June 2018

1 reference

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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

20 June 2018

1 reference

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A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors

20 June 2018

1 reference

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A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

DNA topoisomerases regulate R-loop formation during transcription of the rrnB operon in Escherichia coli.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

A34.5, a nonessential component of yeast RNA polymerase I, cooperates with subunit A14 and DNA topoisomerase I to produce a functional rRNA synthesis machine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

A novel family of TRF (DNA topoisomerase I-related function) genes required for proper nuclear segregation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Replication protein A induces the unwinding of long double-stranded DNA regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Inactivation of topoisomerases affects transcription-dependent chromatin transitions in rDNA but not in a gene transcribed by RNA polymerase II.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

DNA topology and a minimal set of basal factors for transcription by RNA polymerase II

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

The rRNA-encoding DNA array has an altered structure in topoisomerase I mutants of Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Transcription and DNA supercoiling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Electron microscopic study of Saccharomyces cerevisiae rDNA chromatin replication

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Organization of replication of ribosomal DNA in Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Both DNA topoisomerases I and II relax 2 micron plasmid DNA in living yeast cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Cloning of yeast TOP1, the gene encoding DNA topoisomerase I, and construction of mutants defective in both DNA topoisomerase I and DNA topoisomerase II.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Cloning, characterization, and sequence of the yeast DNA topoisomerase I gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Eukaryotic type I topoisomerase is enriched in the nucleolus and catalytically active on ribosomal DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

DNA topoisomerase II is required at the time of mitosis in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

A high affinity topoisomerase I binding sequence is clustered at DNAase I hypersensitive sites in Tetrahymena R-chromatin.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Mitotic recombination in the rDNA of S. cerevisiae is suppressed by the combined action of DNA topoisomerases I and II.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Transcription generates positively and negatively supercoiled domains in the template.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Involvement of DNA topoisomerase I in transcription of human ribosomal RNA genes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Supercoiling of the DNA template during transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Structure of plectonemically supercoiled DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Localized torsional tension in the DNA of human cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Helix opening transitions in supercoiled DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Supercoiling and Local Denaturation of Plasmids with a Minimalist DNA Model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Hypernegative supercoiling inhibits growth by causing RNA degradation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Topoisomerase II inactivation prevents the completion of DNA replication in budding yeast

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

The functional response of upstream DNA to dynamic supercoiling in vivo

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

RNase HI overproduction is required for efficient full-length RNA synthesis in the absence of topoisomerase I in Escherichia coli.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028620

A subthreshold level of DNA topoisomerases leads to the excision of yeast rDNA as extrachromosomal rings

26 November 2018

1 reference

12 December 2020

Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation

1 reference

12 December 2020

DNA transport by a type II DNA topoisomerase: evidence in favor of a two-gate mechanism

1 reference

12 December 2020

Topological complexity of SV40 minichromosomes

1 reference

12 December 2020

Impairment of transcription elongation by R-loops in vitro

1 reference

12 December 2020

DNA torsional stress propagates through chromatin fiber and participates in transcriptional regulation

1 reference

12 December 2020

The Rat1p 5′ to 3′ Exonuclease Degrades Telomeric Repeat-Containing RNA and Promotes Telomere Elongation in Saccharomyces cerevisiae

1 reference

12 December 2020

R-loop-dependent hypernegative supercoiling in Escherichia coli topA mutants preferentially occurs at low temperatures and correlates with growth inhibition

1 reference

12 December 2020

RNase H overproduction corrects a defect at the level of transcription elongation during rRNA synthesis in the absence of DNA topoisomerase I in Escherichia coli

1 reference

12 December 2020

Replication of yeast rDNA initiates downstream of transcriptionally active genes

1 reference

12 December 2020

Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA

1 reference

12 December 2020

Identifiers

DOI

10.1128/MCB.00589-10

1 reference

3 November 2017

1 reference

3 November 2017

PubMed publication ID

21098118

1 reference