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Atomic level architecture of group I introns revealed

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21 June 2017

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Atomic level architecture of group I introns revealed (English)

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Europe PubMed Central

21 June 2017

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Thomas R Cech

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Europe PubMed Central

21 June 2017

Quentin Vicens

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13 December 2005

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Europe PubMed Central

21 June 2017

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Trends in Biochemical Sciences

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21 June 2017

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21 June 2017

41-51

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Europe PubMed Central

21 June 2017

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21 June 2017

VMD: visual molecular dynamics

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Control of gene expression by a natural metabolite-responsive ribozyme

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Metal ion interaction with cosubstrate in self-splicing of group I introns

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Functional identification of catalytic metal ion binding sites within RNA.

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In vitro genetic analysis of the Tetrahymena self-splicing intron

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Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA.

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Crystal structure of a self-splicing group I intron with both exons

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11 October 2022

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Structure and assembly of group I introns

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11 October 2022

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The antiquity of RNA-based evolution

1 reference

11 October 2022

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The chemical repertoire of natural ribozymes

1 reference

11 October 2022

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A hydrogen-bonding triad stabilizes the chemical transition state of a group I ribozyme

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Involvement of a GNRA tetraloop in long-range RNA tertiary interactions

1 reference

11 October 2022

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A general two-metal-ion mechanism for catalytic RNA

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11 October 2022

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Monitoring intermediate folding states of the td group I intron in vivo

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11 October 2022

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A self-splicing RNA excises an intron lariat

1 reference

11 October 2022

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Metal ions and RNA folding: a highly charged topic with a dynamic future

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11 October 2022

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Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Crystal structure of a bacterial ribonuclease P RNA.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

RNase P RNA-mediated catalysis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Three metal ions at the active site of the Tetrahymena group I ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

An axial binding site in the Tetrahymena precursor RNA

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Metal ion catalysis in the Tetrahymena ribozyme reaction

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

A tyrosyl-tRNA synthetase recognizes a conserved tRNA-like structural motif in the group I intron catalytic core

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Crystals by design: a strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Frequent use of the same tertiary motif by self-folding RNAs

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Making ends meet: a model for RNA splicing in fungal mitochondria

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

The guanosine binding site of the Tetrahymena ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Self-splicing of group I introns

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Assessment of a model for intron RNA secondary structure relevant to RNA self-splicing — a review

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

RNA, the first macromolecular catalyst: the ribosome is a ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Minor groove recognition of the conserved G.U pair at the Tetrahymena ribozyme reaction site

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Crystal structure of a group I intron splicing intermediate

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

A second catalytic metal ion in group I ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

The natural history of group I introns

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

A peripheral element assembles the compact core structure essential for group I intron self-splicing.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Group I intron self-splicing with adenosine: evidence for a single nucleoside-binding site

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

The catalytic diversity of RNAs

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Gene discovery by ribozyme and siRNA libraries

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Crystal structure of a phage Twort group I ribozyme-product complex

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

A Group I intron in the nuclear small subunit rRNA gene of Cryptendoxyla hypophloia, an ascomycetous fungus: evidence for a new major class of Group I introns.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

P5abc of the Tetrahymena ribozyme consists of three functionally independent elements

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Protein-dependent transition states for ribonucleoprotein assembly

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Minimal catalytic domain of a group I self-splicing intron RNA

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

RNA-catalysed carbon–carbon bond formation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Ribozyme-mediated repair of defective mRNA by targeted, trans-splicing

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Kinetic intermediates in RNA folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Isolation of new ribozymes from a large pool of random sequences [see comment]

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Modular engineering of a Group I intron ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Basis for structural diversity in homologous RNAs

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

ARTS: alignment of RNA tertiary structures

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Theoretical analyses on the role of Mg2+ ions in ribozyme reactions.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Origin of life: The RNA world

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Probing the role of metal ions in RNA catalysis: kinetic and thermodynamic characterization of a metal ion interaction with the 2'-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

Structural evidence for a two-metal-ion mechanism of group I intron splicing

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

5' transcript replacement in vitro catalyzed by a group I intron-derived ribozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.TIBS.2005.11.008

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DOI

10.1016/J.TIBS.2005.11.008

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stated in

Europe PubMed Central

21 June 2017

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Europe PubMed Central

PubMed ID

16356725

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21 June 2017

ResearchGate publication ID

7412948

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(Q30438980)

Atomic level architecture of group I introns revealed

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