(Q30491708)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

0 references

0 references

Juan Antonio Vizcaíno

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Juri Rappsilber

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Gerhard Mayer

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Simon Perkins

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Marc Vaudel

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Yasset Perez-Riverol

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Tobias Ternent

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Julian Uszkoreit

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Eugen Netz

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Mathias Walzer

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Alexander Leitner

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Robert J Chalkley

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Fawaz Ghali

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

Salvador Martínez De Bartolomé

20 March 2020

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Eric W Deutsch

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

14

Oliver Kohlbacher

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

4

Harald Barsnes

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

20

Andrew R Jones

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

author name string

Martin Eisenacher

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Lutz Fischer

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

publication date

17 May 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

Molecular & Cellular Proteomics

20 March 2020

number of pages

11

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

page(s)

1275-1285

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

20 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

ProCon - PROteomics CONversion tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Representation of selected-reaction monitoring data in the mzQuantML data standard

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Development of data representation standards by the human proteome organization proteomics standards initiative

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

MS-GF+ makes progress towards a universal database search tool for proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Proteogenomics: concepts, applications and computational strategies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

A standardized framing for reporting protein identifications in mzIdentML 1.2

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

How to submit MS proteomics data to ProteomeXchange via the PRIDE database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Matching cross-linked peptide spectra: only as good as the worse identification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

A cross-platform toolkit for mass spectrometry and proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The mzIdentML data standard for mass spectrometry-based proteomics results

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Modification site localization scoring: strategies and performance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

mzML--a community standard for mass spectrometry data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The PSI semantic validator: a framework to check MIAPE compliance of proteomics data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

The PSI formal document process and its implementation on the PSI website

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Interpretation of shotgun proteomic data: the protein inference problem

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

What does it mean to identify a protein in proteomics?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5500760

Mass spectrometry: reconnaissance at the Frontiers of biology

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M117.068429

PeptideShaker enables reanalysis of MS-derived proteomics data sets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M117.068429

Rapid and accurate peptide identification from tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M117.068429

Hierarchical clustering of shotgun proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M117.068429

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M117.068429

Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28515314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M117.068429

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515314%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference