(Q28645794)

9

0 references

Gerhard Mayer

Gerhard Mayer

6

0 references

Andrew Jones

Andrew R Jones

5

0 references

Sandra Orchard

Sandra Orchard

8

0 references

Gil Omenn

Gilbert S Omenn

7

0 references

Eric W Deutsch

1

Eric W Deutsch

0 references

Martin Eisenacher

4

Martin Eisenacher

0 references

Juan Pablo Albar

2

Juan Pablo Albar

0 references

Pierre-Alain Binz

3

Journal of the American Medical Informatics Association

Pierre-Alain Binz

0 references

language of work or name

English

0 references

publication date

May 2015

0 references

1 May 2015

2 references

21 December 2019

25 November 2020

2 references

21 December 2019

25 November 2020

22

0 references

issue

3

0 references

page(s)

495-506

0 references

copyright license

Creative Commons Attribution 4.0 International

2 references

Europe PubMed Central

21 December 2019

Europe PubMed Central

describes a project that uses

25 November 2020

copyright status

copyrighted

0 references

Cytoscape

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

17 March 2017

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17 March 2017

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DrugBank 4.0: shedding new light on drug metabolism

17 March 2017

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Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML

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The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics

17 March 2017

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The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

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MetaboLights: towards a new COSMOS of metabolomics data management

17 March 2017

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A cross-platform toolkit for mass spectrometry and proteomics

17 March 2017

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jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data

17 March 2017

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17 March 2017

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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

17 March 2017

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17 March 2017

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The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative

17 March 2017

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The Ontology Lookup Service: bigger and better

17 March 2017

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mzML: a single, unifying data format for mass spectrometer output

17 March 2017

1 reference

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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

17 March 2017

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Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

17 March 2017

1 reference

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Sharing Detailed Research Data Is Associated with Increased Citation Rate

17 March 2017

1 reference

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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

17 March 2017

1 reference

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PRIDE: a public repository of protein and peptide identifications for the proteomics community

17 March 2017

1 reference

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A common open representation of mass spectrometry data and its application to proteomics research

17 March 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

17 March 2017

1 reference

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DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

17 March 2017

1 reference

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

17 March 2017

1 reference

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17 March 2017

1 reference

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

7 April 2017

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7 April 2017

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qcML: an exchange format for quality control metrics from mass spectrometry experiments

7 April 2017

1 reference

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The jmzQuantML programming interface and validator for the mzQuantML data standard

20 June 2018

1 reference

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A new reference implementation of the PSICQUIC web service

20 June 2018

1 reference

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Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.

20 June 2018

1 reference

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Controlled vocabularies and ontologies in proteomics: overview, principles and practice

20 June 2018

1 reference

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A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis

20 June 2018

1 reference

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Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

20 June 2018

1 reference

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PASSEL: the PeptideAtlas SRMexperiment library

20 June 2018

1 reference

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From proteomics data representation to public data flow: a report on the HUPO-PSI workshop September 2011, Geneva, Switzerland

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

TraML--a standard format for exchange of selected reaction monitoring transition lists

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

Minimum information about a bioactive entity (MIABE).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

The human proteome project: Current state and future direction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

jmzML, an open-source Java API for mzML, the PSI standard for MS data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

ProteoWizard: open source software for rapid proteomics tools development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

20 June 2018

1 reference

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The minimum information required for reporting a molecular interaction experiment (MIMIx).

20 June 2018

1 reference

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The PSI formal document process and its implementation on the PSI website

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

Minimum reporting requirements for proteomics: a MIAPE primer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

Data standards: a call to action

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

PRIDE: the proteomics identifications database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4457114

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Further advances in the development of a data interchange standard for proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Tackling quantitation: a report on the annual Spring Workshop of the HUPO-PSI 28-30 March 2010, Seoul, South Korea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Implementing data standards: a report on the HUPOPSI workshop September 2009, Toronto, Canada

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring Workshop: April 15-17, 2013, Liverpool, UK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Guidelines for reporting the use of mass spectrometry in proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Guidelines for reporting the use of mass spectrometry informatics in proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Reporting protein identification data: the next generation of guidelines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

The PSI-MOD community standard for representation of protein modification data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Minimum information about a protein affinity reagent (MIAPAR)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Guidelines for reporting the use of column chromatography in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Guidelines for reporting the use of gel image informatics in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCV001

Democratizing proteomics data

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25726569

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Definitions of terms relating to mass spectrometry (IUPAC Recommendations 2013)

1 reference

20 August 2023

https://opencitations.net/index/coci/api/v1/citations/10.1351/PAC-REC-06-04-06

Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1016/J.BBAPAP.2013.02.032

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/JAMIA/OCV001

Thou shalt share your data

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/JAMIA/OCV001

Identifiers

DOI

10.1093/JAMIA/OCV001

1 reference

journals/jamia/DeutschABEJMOOV15

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_23zbcfxkkffi3oiu7fmkjfvkgy

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/23zbcfxkkffi3oiu7fmkjfvkgy

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

PubMed publication ID

25726569

1 reference