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Protein pockets: inventory, shape, and comparison
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Europe PubMed Central
PMC publication ID
2859996
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
title
Protein pockets: inventory, shape, and comparison
(English)
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Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
author
Ryan G Coleman
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1
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Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
author name string
Kim A Sharp
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2
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Europe PubMed Central
PMC publication ID
2859996
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
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19 January 2020
publication date
1 April 2010
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2859996
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19 January 2020
published in
Journal of Chemical Information and Modeling
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Europe PubMed Central
PMC publication ID
2859996
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
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19 January 2020
volume
50
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Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
issue
4
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Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
page(s)
589-603
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Europe PubMed Central
PMC publication ID
2859996
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19 January 2020
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Building alternate protein structures using the elastic network model.
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Molecular docking for substrate identification: the short-chain dehydrogenases/reductases
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Automated prediction of ligand-binding sites in proteins
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26 November 2018
Transient Pockets on Protein Surfaces Involved in Protein−Protein Interaction
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Structure-based maximal affinity model predicts small-molecule druggability.
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Travel depth, a new shape descriptor for macromolecules: application to ligand binding.
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Comparison of protein active site structures for functional annotation of proteins and drug design
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
From the similarity analysis of protein cavities to the functional classification of protein families using cavbase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
Conformational diversity of ligands bound to proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
A method for localizing ligand binding pockets in protein structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
An intuitive approach to measuring protein surface curvature.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
A new method to detect related function among proteins independent of sequence and fold homology.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
Fast prediction and visualization of protein binding pockets with PASS.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
Molecular shape comparisons in searches for active sites and functional similarity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859996
retrieved
26 November 2018
Binding Response: A Descriptor for Selecting Ligand Binding Site on Protein Surfaces
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20205445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Structure-based identification of small molecule binding sites using a free energy model
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20205445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1021/CI900397T
1 reference
stated in
Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
DBLP publication ID
journals/jcisd/ColemanS10
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMC publication ID
2859996
1 reference
stated in
Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
PubMed publication ID
20205445
1 reference
stated in
Europe PubMed Central
PMC publication ID
2859996
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205445%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
ResearchGate publication ID
41806086
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