(Q30512312)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Recognition of methylated DNA through methyl-CpG binding domain proteins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Ilia A Solov'yov

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

author name string

Xueqing Zou

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Christophe Chipot

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Klaus Schulten

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

language of work or name

English

0 references

publication date

22 November 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

volume

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

page(s)

2747-2758

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

17 January 2020

copyright license

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Clone history shapes Populus drought responses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Conserved role of intragenic DNA methylation in regulating alternative promoters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Polymorphisms and disease: hotspots of inactivation in methyltransferases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Recruitment of MBD1 to target genes requires sequence-specific interaction of the MBD domain with methylated DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

DNA methylation increases nucleosome compaction and rigidity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

The multi-domain protein Np95 connects DNA methylation and histone modification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

The R46Q, R131Q and R154H polymorphs of human DNA glycosylase/beta-lyase hOgg1 severely distort the active site and DNA recognition site but do not cause unfolding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Deforming DNA: from physics to biology.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

MeCP2 binding to DNA depends upon hydration at methyl-CpG

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Methyl binding domain protein 2 mediates gamma-globin gene silencing in adult human betaYAC transgenic mice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Genomic DNA methylation: the mark and its mediators

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Scalable molecular dynamics with NAMD

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Structure of the sporulation-specific transcription factor Ndt80 bound to DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Methyl-CpG-binding proteins. Targeting specific gene repression.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Methylation-induced repression--belts, braces, and chromatin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

The solution structure of the domain from MeCP2 that binds to methylated DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Identification and characterization of a family of mammalian methyl-CpG binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Free energy of burying hydrophobic residues in the interface between protein subunits.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Is polarization important in cation-pi interactions?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

How does DNA methylation repress transcription?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

VMD: visual molecular dynamics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

DNA Methylation and Gene Function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Environment and exposure to solvent of protein atoms. Lysozyme and insulin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

DNA methylation affects the formation of active chromatin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

DNA conformation and protein binding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

CpG-rich islands and the function of DNA methylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

The essentials of DNA methylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315304

DNA methylation-mediated epigenetic control.

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

The role of DNA methylation in mammalian epigenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

The role of DNA methylation in setting up chromatin structure during development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Proteins that bind methylated DNA and human cancer: reading the wrong words

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Towards an understanding of DNA recognition by the methyl-CpG binding domain 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Kinetic and thermodynamic evidence for flipping of a methyl-CpG binding domain on methylated DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

DNA demethylation induced by the methyl-CpG-binding domain protein MBD3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Fas-associated death domain protein interacts with methyl-CpG binding domain protein 4: a potential link between genome surveillance and apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Recognition of 5'-YpG-3' sequences by coupled stacking/hydrogen bonding interactions with amino acid residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Cation-pi/H-bond stair motifs at protein-DNA interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Stair motifs at protein-DNA interfaces: nonadditivity of H-bond, stacking, and cation-pi interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Molecular dynamics simulations of nucleic acid-protein complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

General atomic and molecular electronic structure system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Note on an Approximation Treatment for Many-Electron Systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

High‐Temperature Equation of State by a Perturbation Method. I. Nonpolar Gases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Good practices in free-energy calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

A critical note on density functional theory studies on rare-gas dimers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1057

Ab initio study of alanine polypeptide chain twisting

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22110028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Contribution of cation-pi interactions to the stability of protein-DNA complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22110028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modeling Induction Phenomena in Intermolecular Interactions with an Ab Initio Force Field

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22110028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR1057

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22110028%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference