(Q30559723)

24 June 2017

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets (English)

1 reference

24 June 2017

1 reference

1 reference

1 reference

Denis Baurain

2

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Hervé Philippe

series ordinal

3

object named as

Hervé Philippe

1 reference

24 June 2017

Béatrice Roure

1

1 reference

24 June 2017

28 August 2012

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Molecular Biology and Evolution

24 June 2017

1 reference

24 June 2017

30

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24 June 2017

197-214

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24 June 2017

1

1 reference

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

24 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

The (Super)Tree of Life: Procedures, Problems, and Prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

SDM: a fast distance-based approach for (super) tree building in phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Fast NJ-like algorithms to deal with incomplete distance matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Tunicates and not cephalochordates are the closest living relatives of vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Prospects for building the tree of life from large sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

The phylogenetic position of Myxozoa: exploring conflicting signals in phylogenomic and ribosomal data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

The New View of Animal Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Assessing the root of bilaterian animals with scalable phylogenomic methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Origin of land plants revisited in the light of sequence contamination and missing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Anchored hybrid enrichment for massively high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Parallel adaptive radiations in two major clades of placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Multigene analyses identify the three earliest lineages of extant flowering plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

MUST, a computer package of Management Utilities for Sequences and Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Acoelomorph flatworms are deuterostomes related to Xenoturbella

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Resolving difficult phylogenetic questions: why more sequences are not enough

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Acoel flatworms are not platyhelminthes: evidence from phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Phylogenomics revives traditional views on deep animal relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Phylogenomics of eukaryotes: impact of missing data on large alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Large-scale sequencing and the new animal phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Genome-scale phylogeny and the detection of systematic biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Inferring phylogenies from RAD sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Terraces in phylogenetic tree space

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Phylogenetic supertrees: Assembling the trees of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

A phylogenomic approach to resolve the basal pterygote divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Improving animal phylogenies with genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

BIO::Phylo-phyloinformatic analysis using perl

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Does adding characters with missing data increase or decrease phylogenetic accuracy?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Missing data, incomplete taxa, and phylogenetic accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Missing data and the design of phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Missing data in phylogenetic analysis: reconciling results from simulations and empirical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Highly incomplete taxa can rescue phylogenetic analyses from the negative impacts of limited taxon sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

Increased taxon sampling greatly reduces phylogenetic error

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS208

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSS208

1 reference

24 June 2017

1 reference

PubMed ID

22930702