(Q30559741)

24 June 2017

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis (English)

1 reference

high-throughput sequencing

24 June 2017

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1 reference

1 reference

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1 reference

1 reference

8

Megan Morikawa

1 reference

24 June 2017

9

Stephen R Palumbi

1 reference

24 June 2017

3

Jason T Ladner

1 reference

24 June 2017

2

Melissa H Pespeni

1 reference

24 June 2017

Pierre De Wit

1

1 reference

24 June 2017

Daniel J Barshis

4

1 reference

24 June 2017

François Seneca

5

1 reference

24 June 2017

Hannah Jaris

6

1 reference

24 June 2017

Nina Overgaard Therkildsen

7

1 reference

24 June 2017

29 August 2012

1 reference

Molecular Ecology Resources

24 June 2017

1 reference

24 June 2017

12

1 reference

24 June 2017

1058-1067

1 reference

24 June 2017

6

1 reference

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

24 June 2017

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

The Universal Protein Resource (UniProt) 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

De novo genome assembly: what every biologist should know

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

GOing Bayesian: model-based gene set analysis of genome-scale data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Sense from sequence reads: methods for alignment and assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A hierarchical Bayesian model for next-generation population genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A biologist's guide to de novo genome assembly using next-generation sequence data: A test with fungal genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Sequencing breakthroughs for genomic ecology and evolutionary biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

The genomic basis of adaptive evolution in threespine sticklebacks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

SNP genotyping: technologies and biomedical applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Estimation of allele frequencies from high-coverage genome-sequencing projects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Next-generation transcriptome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Applications of new sequencing technologies for transcriptome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

SNP genotyping defines complex gene-flow boundaries among African malaria vector mosquitoes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

From RNA-seq reads to differential expression results

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Population structure and eigenanalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Signals of recent positive selection in a worldwide sample of human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

SEWAL: an open-source platform for next-generation sequence analysis and visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Bioinformatics challenges of new sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A scaling normalization method for differential expression analysis of RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Insights into hominid evolution from the gorilla genome sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Statistical significance for genomewide studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

REVIGO summarizes and visualizes long lists of gene ontology terms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

PANTHER: a library of protein families and subfamilies indexed by function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

The genetic structure and history of Africans and African Americans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Human whole-genome shotgun sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

A beginner's guide to eukaryotic genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

Sequencing of 50 human exomes reveals adaptation to high altitude

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12003

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12003

1 reference

24 June 2017

1 reference