(Q30635438)

English

VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data

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scholarly article

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Europe PubMed Central

PMC publication ID

25 September 2017

VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data (English)

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

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object named as

Qingguo Wang

1

0 references

2

object named as

Peilin Jia

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

3

object named as

Zhongming Zhao

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

language of work or name

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publication date

24 May 2013

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

8

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

5

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

e64465

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

copyright license

Creative Commons Attribution 4.0 International

24 May 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

massive parallel sequencing

1 reference

based on heuristic

inferred from title

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Rapid identification of non-human sequences in high-throughput sequencing datasets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

De novo identification of viral pathogens from cell culture hologenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

The mutational landscape of head and neck squamous cell carcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

PathSeq: software to identify or discover microbes by deep sequencing of human tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Human papillomavirus type 16 (HPV-16) genomes integrated in head and neck cancers and in HPV-16-immortalized human keratinocyte clones express chimeric virus-cell mRNAs similar to those found in cervical cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

BLAST+: architecture and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

BLAT—The BLAST-Like Alignment Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663743

14 July 2018

Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064465

21 January 2018

The presence of Merkel cell polyomavirus is associated with deregulated expression of BRAF and Bcl-2 genes in non-small cell lung cancer.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064465

21 January 2018

Identifiers

10.1371/JOURNAL.PONE.0064465

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

2013PLoSO...864465W

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

25 September 2017

ResearchGate publication ID

0 references

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