(Q30648093)

17 August 2017

1 reference

INMEX--a web-based tool for integrative meta-analysis of expression data (English)

1 reference

17 August 2017

1 reference

Christopher D Fjell

2

0 references

Jianguo Xia

object named as

Jianguo Xia

1

0 references

David Wishart

object named as

David S Wishart

5

0 references

Robert E. W. Hancock

6

object named as

Robert E W Hancock

1 reference

17 August 2017

Matthew L Mayer

3

1 reference

PMCID

3692077

17 August 2017

Olga M Pena

4

1 reference

PMCID

3692077

17 August 2017

language of work or name

English

0 references

publication date

12 June 2013

1 reference

17 August 2017

Nucleic Acids Research

1 reference

17 August 2017

41

1 reference

17 August 2017

Web Server issue

1 reference

17 August 2017

W63-70

1 reference

Creative Commons Attribution 3.0 Unported

17 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3692077

based on heuristic

inferred from PubMed Central ID database lookup

cites work

CancerMA: a web-based tool for automatic meta-analysis of public cancer microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

ArrayExpress update--trends in database growth and links to data analysis tools

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Comprehensive literature review and statistical considerations for microarray meta-analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

MGV: a generic graph viewer for comparative omics data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

NCBI GEO: archive for functional genomics data sets--10 years on

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

MetPA: a web-based metabolomics tool for pathway analysis and visualization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

integrOmics: an R package to unravel relationships between two omics datasets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

A-MADMAN: annotation-based microarray data meta-analysis tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

HMDB: a knowledgebase for the human metabolome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Key issues in conducting a meta-analysis of gene expression microarray datasets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

GEPAS, a web-based tool for microarray data analysis and interpretation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Using GOstats to test gene lists for GO term association

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

GeneX Va: VBC open source microarray database and analysis software

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Adjustment of systematic microarray data biases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Combining multiple microarray studies and modeling interstudy variation.

14 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT338

Fusing microarray experiments with multivariate regression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT338

Moderated effect size and P-value combinations for microarray meta-analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT338

Web-based GeneChip analysis system for large-scale collaborative projects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT338

RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT338

MADMAX - Management and analysis database for multiple ~omics experiments.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692077

The Combination of Estimates from Different Experiments

25 November 2018

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/NAR/GKT338

Comments on the rank product method for analyzing replicated experiments

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/NAR/GKT338

Identifiers

DOI

10.1093/NAR/GKT338

1 reference

17 August 2017

journals/nar/XiaFMPWH13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 August 2017

1 reference

PMCID

3692077