(Q30659020)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Whole transcriptome profiling of the vernalization process in Lilium longiflorum (cultivar White Heaven) bulbs (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

Lilium longiflorum

1 reference

Francisco Federico Núñez de Cáceres González

inferred from title

author

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Michele Zaccai

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Carlos Villacorta-Martin

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Jorn de Haan

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Kitty Huijben

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Paul Passarinho

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Maya Lugassi-Ben Hamo

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

language of work or name

English

0 references

publication date

28 July 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

550

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

20 February 2020

copyright license

start time

28 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Characterization of expressed sequence tags from Lilium longiflorum in vernalized and non-vernalized bulbs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Transcriptomic analysis of Asiatic lily in the process of vernalization via RNA-seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The role of replicates for error mitigation in next-generation sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Transfer of knowledge about flowering and vegetative propagation from model species to bulbous plants.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Analysis of rice Snf2 family proteins and their potential roles in epigenetic regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The molecular basis of vernalization in different plant groups.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Coordination of the vernalization response through a VIN3 and FLC gene family regulatory network in Arabidopsis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

GSVA: gene set variation analysis for microarray and RNA-seq data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Analysis of the bread wheat genome using whole-genome shotgun sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Vernalization - a cold-induced epigenetic switch

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Vernalization-mediated chromatin changes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The role of a pseudo-response regulator gene in life cycle adaptation and domestication of beet.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Regulation of biological accuracy, precision, and memory by plant chromatin organization.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The Pfam protein families database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Next-generation transcriptome assembly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Meta-IDBA: a de Novo assembler for metagenomic data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

HMMER web server: interactive sequence similarity searching

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Full-length transcriptome assembly from RNA-Seq data without a reference genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Encoding memory of winter by noncoding RNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Differential expression analysis for sequence count data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Vernalization: winter and the timing of flowering in plants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Vernalization-induced flowering in cereals is associated with changes in histone methylation at the VERNALIZATION1 gene.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

ABySS: a parallel assembler for short read sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Regulation of flowering in temperate cereals.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Gene-set approach for expression pattern analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Analyzing gene expression data in terms of gene sets: methodological issues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The wheat and barley vernalization gene VRN3 is an orthologue of FT

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

STEM: a tool for the analysis of short time series gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Remembering winter: toward a molecular understanding of vernalization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

DNA methylation, vernalization, and the initiation of flowering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4515921

An antagonistic pair of FT homologs mediates the control of flowering time in sugar beet

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

The Arabidopsis FLC protein interacts directly in vivo with SOC1 and FT chromatin and is part of a high-molecular-weight protein complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Quantitative effects of vernalization on FLC and SOC1 expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

The VERNALIZATION INDEPENDENCE 4 gene encodes a novel regulator of FLOWERING LOCUS C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Epigenetic regulation of gene programs by EMF1 and EMF2 in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Molecular cloning of SVP: a negative regulator of the floral transition in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

The flowering-time geneFT and regulation of flowering inArabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Genetic mapping in Lilium: mapping of major genes and quantitative trait loci for several ornamental traits and disease resistances

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1675-1

Dividing Cells as the Prerequisite for Vernalization

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26216467

12 December 2020

inferred from PubMed ID database lookup

When Vernalization Makes Sense

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26216467

12 December 2020

inferred from PubMed ID database lookup

The timing of flowering

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26216467

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/S12864-015-1675-1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

20 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-1675-1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

26216467

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26216467%20AND%20SRC:MED&resulttype=core&format=json