(Q30659606)

English

Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

0 references

whole genome sequencing

1 reference

based on heuristic

inferred from title

Bernard Henrissat

4

0 references

object named as

Petra Louis

2

0 references

Alexander Goesmann

object named as

Alexander Goesmann

3

0 references

author name string

Udo Wegmann

1

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Sylvia H Duncan

5

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Harry J Flint

6

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

publication date

6 August 2013

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Environmental Microbiology

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

16

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

2879-2890

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The RAST Server: rapid annotations using subsystems technology

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

CRITICA: coding region identification tool invoking comparative analysis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

VanG-type vancomycin-resistant Enterococcus faecalis strains isolated in Canada

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Cloning and expression of cDNA encoding human galactocerebrosidase, the enzyme deficient in globoid cell leukodystrophy

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

WebLogo: A Sequence Logo Generator

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Distribution of beta-glucosidase and beta-glucuronidase activity and of beta-glucuronidase gene gus in human colonic bacteria.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The vanG glycopeptide resistance operon from Enterococcus faecalis revisited

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Improved detection of helix-turn-helix DNA-binding motifs in protein sequences

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Effects of alternative dietary substrates on competition between human colonic bacteria in an anaerobic fermentor system.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The role of pH in determining the species composition of the human colonic microbiota

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Diversity of the human intestinal microbial flora

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Microbial degradation of complex carbohydrates in the gut

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The role of the gut microbiota in nutrition and health.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The Gene Ontology (GO) database and informatics resource

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

TIGRFAMs: a protein family resource for the functional identification of proteins

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

KEGG for linking genomes to life and the environment

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Design and validation of 16S rRNA probes to enumerate members of the Clostridium leptum subgroup in human faecal microbiota.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

PduL is an evolutionarily distinct phosphotransacylase involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar typhimurium LT2.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids, and host-derived substrates for growth

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Development of joint application strategies for two microbial gene finders.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

UniProt Knowledgebase: a hub of integrated protein data

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Functional analysis of all aminotransferase proteins inferred from the genome sequence of Corynebacterium glutamicum.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

SIGI: score-based identification of genomic islands

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

GenDB--an open source genome annotation system for prokaryote genomes

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Invited review: adhesion mechanisms of rumen cellulolytic bacteria

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Complete genome sequence of highly multidrug-resistant Pseudomonas aeruginosa NCGM2.S1, a representative strain of a cluster endemic to Japan

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The InterPro database, 2003 brings increased coverage and new features

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

SignalP 4.0: discriminating signal peptides from transmembrane regions

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The Pfam protein families database

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

A human gut microbial gene catalogue established by metagenomic sequencing

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Adhesion to cellulose of the Gram-positive bacterium Ruminococcus albus involves type IV pili

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The Ruminococcus albus pilA1-pilA2 locus: expression and putative role of two adjacent pil genes in pilus formation and bacterial adhesion to cellulose.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

EndB, a multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R. flavefaciens protein via a dockerin domain

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Microbial gene identification using interpolated Markov models

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

A probabilistic method for identifying start codons in bacterial genomes.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Epimerization of disaccharides by enzyme preparations from Ruminococcus albus

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Type IV pili-dependent gliding motility in the Gram-positive pathogen Clostridium perfringens and other Clostridia

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Expression of cellulosome components and type IV pili within the extracellular proteome of Ruminococcus flavefaciens 007.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Urea metabolism in man.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Prokaryotes: the unseen majority

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

A single amino acid change is responsible for evolution of acyltransferase specificity in bacterial methionine biosynthesis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12217

21 January 2018

Identifiers

10.1111/1462-2920.12217

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30659606&oldid=2139125240"