(Q30727507)

26 June 2017

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title

A natural classification of ribonucleases (English)

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26 June 2017

2

Koonin EV

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26 June 2017

Aravind L

1

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26 June 2017

language of work or name

English

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publication date

1 January 2001

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26 June 2017

published in

Methods in Enzymology

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26 June 2017

volume

341

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26 June 2017

page(s)

3-28

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The HD domain defines a new superfamily of metal-dependent phosphohydrolases

26 June 2017

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7 January 2021

A novel family of predicted phosphoesterases includes Drosophila prune protein and bacterial RecJ exonuclease

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7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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7 January 2021

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

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7 January 2021

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

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7 January 2021

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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7 January 2021

SCOP: a structural classification of proteins database

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7 January 2021

Combining evolutionary information and neural networks to predict protein secondary structure

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7 January 2021

Comparison of the complete protein sets of worm and yeast: orthology and divergence

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7 January 2021

Distinguishing Homologous from Analogous Proteins

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7 January 2021

A genomic perspective on protein families

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7 January 2021

The COG database: new developments in phylogenetic classification of proteins from complete genomes

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7 January 2021

Using the COG database to improve gene recognition in complete genomes

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7 January 2021

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

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7 January 2021

Crystal structure of a dimeric archaeal splicing endonuclease

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7 January 2021

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The yeast tRNA splicing endonuclease: a tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases

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7 January 2021

An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins

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7 January 2021

Crystal structure of archaeal RNase HII: a homologue of human major RNase H

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7 January 2021

Co-crystal of Escherichia coli RNase HI with Mn2+ ions reveals two divalent metals bound in the active site

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7 January 2021

Did DNA replication evolve twice independently?

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7 January 2021

2.1 A resolution refined structure of a TATA box-binding protein (TBP)

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7 January 2021

The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box

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7 January 2021

NMR structure of the N-terminal domain of Saccharomyces cerevisiae RNase HI reveals a fold with a strong resemblance to the N-terminal domain of ribosomal protein L9

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7 January 2021

Eukaryotic RNAse H shares a conserved domain with caulimovirus proteins that facilitate translation of polycistronic RNA.

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7 January 2021

The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains

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7 January 2021

3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

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7 January 2021

RNase T shares conserved sequence motifs with DNA proofreading exonucleases

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7 January 2021

A conserved ancient domain joins the growing superfamily of 3'-5' exonucleases

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7 January 2021

The exosome: a proteasome for RNA?

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7 January 2021

Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast

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7 January 2021

The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity

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7 January 2021

Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifs

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7 January 2021

The premature ageing syndrome protein, WRN, is a 3'-->5' exonuclease

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7 January 2021

A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases

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7 January 2021

Genetic requirements for inheritance of RNAi in C. elegans

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7 January 2021

Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD.

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7 January 2021

Asymmetric germ cell division and oocyte determination during Drosophila oogenesis

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7 January 2021

An Egalitarian-BicaudalD complex is essential for oocyte specification and axis determination in Drosophila.

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7 January 2021

Cap-dependent deadenylation of mRNA

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7 January 2021

The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes.

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7 January 2021

Messenger RNA stability and its role in control of gene expression in bacteria and phages

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7 January 2021

Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli

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7 January 2021

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.

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7 January 2021

Human dis3p, which binds to either GTP- or GDP-Ran, complements Saccharomyces cerevisiae dis3

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7 January 2021

PIN domains in nonsense-mediated mRNA decay and RNAi

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7 January 2021

Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach

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7 January 2021

A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor

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7 January 2021

Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)

1 reference

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7 January 2021

RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

1 reference

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7 January 2021

The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

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7 January 2021

Comparative sequence analysis of ribonucleases HII, III, II PH and D

1 reference

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7 January 2021

A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation

1 reference

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7 January 2021

NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5

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7 January 2021

A ribosomal protein module in EF-G and DNA gyrase.

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7 January 2021

Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase

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7 January 2021

Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor

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7 January 2021

A multisubunit 3' end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor

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7 January 2021

The role of Glu73 of barnase in catalysis and the binding of barstar

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7 January 2021

The ribonuclease A superfamily: general discussion

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7 January 2021

The major birch pollen allergen, Bet v 1, shows ribonuclease activity

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7 January 2021

A birch gene family encoding pollen allergens and pathogenesis-related proteins

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7 January 2021

Inorganic polyphosphate: a molecule of many functions

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7 January 2021

Protein fold recognition using sequence profiles and its application in structural genomics

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7 January 2021

An essential yeast gene with homology to the exonuclease-encoding XRN1/KEM1 gene also encodes a protein with exoribonuclease activity

1 reference

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7 January 2021

Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast.

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7 January 2021

Function, mechanism and regulation of bacterial ribonucleases

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7 January 2021

Extended N-terminal sequencing of proteins of the large ribosomal subunit from yeast mitochondria

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7 January 2021

Double-stranded RNA as a template for gene silencing

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7 January 2021

Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain

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7 January 2021

Atomic structure of PDE4: insights into phosphodiesterase mechanism and specificity

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7 January 2021

OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

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7 January 2021

An homologue of the human 100-kDa protein (p100) is differentially expressed by Histoplasma capsulatum during infection of murine macrophages

1 reference

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7 January 2021

Ribonuclease P: unity and diversity in a tRNA processing ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2801%2941142-6

7 January 2021

Ribonuclease P: the diversity of a ubiquitous RNA processing enzyme

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7 January 2021

Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA

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7 January 2021

Ribonuclease P protein structure: evolutionary origins in the translational apparatus

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7 January 2021

Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP

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7 January 2021

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

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https://api.crossref.org/works/10.1016%2FS0076-6879%2801%2941142-6

7 January 2021

The exosome: a versatile RNA processing machine

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7 January 2021

The cleavage and polyadenylation specificity factor in Xenopus laevis oocytes is a cytoplasmic factor involved in regulated polyadenylation

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7 January 2021

The rde-1 gene, RNA interference, and transposon silencing in C. elegans

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7 January 2021

Lineage-specific loss and divergence of functionally linked genes in eukaryotes

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7 January 2021

The impact of comparative genomics on our understanding of evolution

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7 January 2021

Molecular structure of the DNA cross-link repair gene SNM1 (PSO2) of the yeast Saccharomyces cerevisiae

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https://api.crossref.org/works/10.1016%2FS0076-6879%2801%2941142-6

7 January 2021

Mutational analysis of the RecJ exonuclease of Escherichia coli: identification of phosphoesterase motifs

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https://api.crossref.org/works/10.1016%2FS0076-6879%2801%2941142-6

7 January 2021

10.1016/S0076-6879(01)41142-6

Identifiers

DOI

1 reference

26 June 2017

1 reference